Cagra.3706s0004 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.3706s0004 T049297_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.866 0.796
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.845 0.735
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.845 0.735
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3706s0004.1.p bHLH 242 290

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02335 Aegilops tauschii F775_02335 N
F775_08326 Aegilops tauschii F775_08326 I
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I
LBD11 Arabidopsis thaliana AT2G28500 N
LBD12 Arabidopsis thaliana AT2G30130 I
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I
Bo01039s010 Brassica oleracea Bo01039s010 N
Bo3g040220 Brassica oleracea Bo3g040220 N
Bo4g059700 Brassica oleracea Bo4g059700 I
Bo4g165420 Brassica oleracea Bo4g165420 N
Bo4g170770 Brassica oleracea Bo4g170770 I
Bo5g008590 Brassica oleracea Bo5g008590 N
Bo8g112780 Brassica oleracea Bo8g112780 N
Bra000491 Brassica rapa Bra000491 N
Bra011942 Brassica rapa Bra011942 N
Bra018335 Brassica rapa Bra018335 I
Bra018675 Brassica rapa Bra018675 N
Bra021612 Brassica rapa Bra021612 I
Bra031599 Brassica rapa Bra031599 N
Bra035698 Brassica rapa Bra035698 N
PK23777.1 Cannabis sativa PK23777.1 I
PK27389.1 Cannabis sativa PK27389.1 I
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N
Carubv10010390m.g Capsella rubella Carubv10010390m.g N
Carubv10023989m.g Capsella rubella Carubv10023989m.g N
Carubv10025543m.g Capsella rubella Carubv10025543m.g I
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N
Ca_02507 Cicer arietinum Ca_02507 N
Ca_04287 Cicer arietinum Ca_04287 I
Ca_13575 Cicer arietinum Ca_13575 I
Ca_14605 Cicer arietinum Ca_14605 I
Cla000556 Citrullus lanatus Cla000556 I
Cla005133 Citrullus lanatus Cla005133 N
Cla005134 Citrullus lanatus Cla005134 N
Cla020379 Citrullus lanatus Cla020379 I
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I
Cucsa.052720 Cucumis sativus Cucsa.052720 I
Cucsa.166030 Cucumis sativus Cucsa.166030 N
Cucsa.207390 Cucumis sativus Cucsa.207390 N
Cucsa.207400 Cucumis sativus Cucsa.207400 N
Cucsa.239660 Cucumis sativus Cucsa.239660 I
Cucsa.275710 Cucumis sativus Cucsa.275710 N
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I
GLYMA02G43030 Glycine max GLYMA02G43030 I
GLYMA10G35760 Glycine max GLYMA10G35760 I
GLYMA11G15810 Glycine max GLYMA11G15810 N
GLYMA11G29450 Glycine max GLYMA11G29450 I
GLYMA12G07650 Glycine max GLYMA12G07650 I
GLYMA13G40370 Glycine max GLYMA13G40370 I
GLYMA14G06140 Glycine max GLYMA14G06140 I
GLYMA15G05030 Glycine max GLYMA15G05030 I
GLYMA20G31780 Glycine max GLYMA20G31780 I
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I
MLOC_5148 Hordeum vulgare MLOC_5148 I
MLOC_68570 Hordeum vulgare MLOC_68570 N
LPERR03G11720 Leersia perrieri LPERR03G11720 N
LPERR05G01520 Leersia perrieri LPERR05G01520 N
Lus10011645.g Linum usitatissimum Lus10011645.g I
Lus10031191.g Linum usitatissimum Lus10031191.g I
Lus10036130.g Linum usitatissimum Lus10036130.g I
Lus10040373.g Linum usitatissimum Lus10040373.g I
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I
CM1887.100.nc Lotus japonicus CM1887.100.nc I
MDP0000123013 Malus domestica MDP0000123013 I
MDP0000151784 Malus domestica MDP0000151784 I
MDP0000155138 Malus domestica MDP0000155138 I
MDP0000218986 Malus domestica MDP0000218986 I
MDP0000318244 Malus domestica MDP0000318244 I
MDP0000319331 Malus domestica MDP0000319331 I
MDP0000822986 Malus domestica MDP0000822986 I
MDP0000879799 Malus domestica MDP0000879799 N
cassava11218.m1 Manihot esculenta cassava11218.m1 I
cassava16668.m1 Manihot esculenta cassava16668.m1 N
cassava20865.m1 Manihot esculenta cassava20865.m1 I
cassava26200.m1 Manihot esculenta cassava26200.m1 I
cassava40961.m1 Manihot esculenta cassava40961.m1 I
cassava4159.m1 Manihot esculenta cassava4159.m1 N
cassava44959.m1 Manihot esculenta cassava44959.m1 N
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I
MTR_1g095850 Medicago truncatula MTR_1g095850 I
MTR_2g068760 Medicago truncatula MTR_2g068760 I
MTR_2g093310 Medicago truncatula MTR_2g093310 I
MTR_3g071590 Medicago truncatula MTR_3g071590 I
MTR_4g060950 Medicago truncatula MTR_4g060950 I
mgf015666m Mimulus guttatus mgf015666m N
mgf018189m Mimulus guttatus mgf018189m I
mgf019622m Mimulus guttatus mgf019622m N
mgf022524m Mimulus guttatus mgf022524m N
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N
OBART03G13260 Oryza barthii OBART03G13260 N
OB03G23270 Oryza brachyantha OB03G23270 N
OB05G11740 Oryza brachyantha OB05G11740 I
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N
BGIOSGA010952 Oryza indica BGIOSGA010952 N
BGIOSGA038947 Oryza indica BGIOSGA038947 N
OMERI03G12370 Oryza meridionalis OMERI03G12370 N
ONIVA03G14510 Oryza nivara ONIVA03G14510 N
OPUNC03G12790 Oryza punctata OPUNC03G12790 N
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N
OS03G0287400 Oryza sativa OS03G0287400 N
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N
Pavir.J04684 Panicum virgatum Pavir.J04684 I
Pavir.J06256 Panicum virgatum Pavir.J06256 I
Pavir.J13923 Panicum virgatum Pavir.J13923 I
Pavir.J18260 Panicum virgatum Pavir.J18260 I
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I
Pm000938 Prunus mume Pm000938 I
Pm018585 Prunus mume Pm018585 I
Pm018982 Prunus mume Pm018982 I
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I
29729.m002278 Ricinus communis 29729.m002278 I
30111.m000703 Ricinus communis 30111.m000703 I
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I
Si024430m.g Setaria italica Si024430m.g N
Si026864m.g Setaria italica Si026864m.g I
Si037280m.g Setaria italica Si037280m.g N
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I
Sb01g038650 Sorghum bicolor Sb01g038650 N
Sb09g002190 Sorghum bicolor Sb09g002190 I
TCM_041094 Theobroma cacao TCM_041094 I
TCM_042212 Theobroma cacao TCM_042212 I
TCM_042447 Theobroma cacao TCM_042447 I
TCM_043081 Theobroma cacao TCM_043081 I
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I
TRIUR3_11082 Triticum urartu TRIUR3_11082 I
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I
AC214648.3_FG005 Zea mays AC214648.3_FG005 I
GRMZM2G021095 Zea mays GRMZM2G021095 N
GRMZM2G145568 Zea mays GRMZM2G145568 N
GRMZM2G165805 Zea mays GRMZM2G165805 N