Pavir.Ib01574 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ib01574 T072429_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK00315.1
M01153_2.00 		Cannabis sativa
NNGACAGCTRN
NYAGCTGTCNN		 PBM
Lambert et al.(2019)
pTH10085 		0.846 0.968
PK16335.1
M01157_2.00 		Cannabis sativa
NNNNKACAGCTRN
NYAGCTGTMNNNN		 PBM
Lambert et al.(2019)
pTH10187 		0.846 0.952
AtbZIP52
M06746_2.00 		Arabidopsis thaliana
DTGMCAGCYBDNHH
DDNHVRGCTGKCAH		 Dap-seq
OMalley et al.(2016)
bZIP52_colamp_a 		0.832 0.887
AtbZIP52
M06747_2.00 		Arabidopsis thaliana
DTGMCAGCYKDNHN
NDNHMRGCTGKCAH		 Dap-seq
OMalley et al.(2016)
bZIP52_col_v31 		0.832 0.887
BZIP18
M01777_2.00 		Arabidopsis thaliana
NDMCARNHNN
NNDNYTGKHN		 PBM
Weirauch et al.(2014)
pTH7316 		0.831 0.919
BZIP18
M06768_2.00 		Arabidopsis thaliana
DTGMCAGCTDD
HHAGCTGKCAH		 Dap-seq
OMalley et al.(2016)
bZIP18_colamp_a 		0.831 0.919
BZIP18
M06769_2.00 		Arabidopsis thaliana
TGMCAGCTKKN
NMMAGCTGKCA		 Dap-seq
OMalley et al.(2016)
bZIP18_col_v31 		0.831 0.919
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01574.1.p bZIP 81 142

Links

Other bZIP family TFs
Other Panicum virgatum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N
SIGC Arabidopsis thaliana AT3G53920 N
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N
Bo4g120510 Brassica oleracea Bo4g120510 N
Bra014857 Brassica rapa Bra014857 N
PK05603.1 Cannabis sativa PK05603.1 N
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N
Carubv10016920m.g Capsella rubella Carubv10016920m.g N
Ca_14896 Cicer arietinum Ca_14896 N
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N
GLYMA14G22170 Glycine max GLYMA14G22170 N
GLYMA17G26620 Glycine max GLYMA17G26620 N
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N
MDP0000135483 Malus domestica MDP0000135483 N
MDP0000315125 Malus domestica MDP0000315125 N
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N
MTR_1g007370 Medicago truncatula MTR_1g007370 N
mgf012819m Mimulus guttatus mgf012819m N
Pm005208 Prunus mume Pm005208 N
Pm005207 Prunus mume Pm005207 N
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N
29794.m003368 Ricinus communis 29794.m003368 N
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N
SIGC Vitis vinifera VIT_04s0008g00600 N