Bra009464 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra009464 T081901_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.827 0.957
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.820 0.891
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.820 0.891
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.820 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.826
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.826
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.696
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009464.1-P C2H2 ZF 87 109
Bra009464.1-P C2H2 ZF 146 168

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.000
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.000
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.000
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.000
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.000
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.000
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.000
AP3 Arabidopsis thaliana AT3G54340 D 0.000
PI Arabidopsis thaliana AT5G20240 D 0.000
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.000
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.000
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.000
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.000
Bo2g020730 Brassica oleracea Bo2g020730 I 0.000
Bo3g010390 Brassica oleracea Bo3g010390 I 0.000
Bo3g014100 Brassica oleracea Bo3g014100 I 0.000
Bo4g120010 Brassica oleracea Bo4g120010 I 0.000
Bo7g098190 Brassica oleracea Bo7g098190 I 0.000
Bo8g083600 Brassica oleracea Bo8g083600 I 0.000
Bo9g152080 Brassica oleracea Bo9g152080 I 0.000
Bra002285 Brassica rapa Bra002285 I 0.000
Bra006549 Brassica rapa Bra006549 I 0.000
Bra007067 Brassica rapa Bra007067 I 0.000
Bra012997 Brassica rapa Bra012997 I 0.000
Bra014822 Brassica rapa Bra014822 I 0.000
Bra020093 Brassica rapa Bra020093 I 0.000
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.000
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.000
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.000
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.000
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.000
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.000
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.000
Ca_01994 Cicer arietinum Ca_01994 I 0.000
Ca_03887 Cicer arietinum Ca_03887 I 0.000
Ca_04909 Cicer arietinum Ca_04909 I 0.000
Ca_13111 Cicer arietinum Ca_13111 I 0.000
Cla021117 Citrullus lanatus Cla021117 I 0.000
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.000
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.000
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.000
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.000
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.000
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.000
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.000
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.000
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.000
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.000
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.000
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.000
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.000
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.000
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.000
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.000
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.000
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.000
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.000
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.000
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.000
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.000
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.000
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.000
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.000
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.000
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.000
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.000
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.000
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.000
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.000
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.000
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.000
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.000
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.000
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.000
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.000
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.000
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.000
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.000
MDP0000133037 Malus domestica MDP0000133037 I 0.000
MDP0000184294 Malus domestica MDP0000184294 I 0.000
MDP0000224779 Malus domestica MDP0000224779 I 0.000
MDP0000315938 Malus domestica MDP0000315938 I 0.000
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.000
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.000
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.000
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.000
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.000
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.000
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.000
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.000
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.000
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.000
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.000
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.000
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.000
mgf003143m Mimulus guttatus mgf003143m I 0.000
mgf006158m Mimulus guttatus mgf006158m I 0.000
mgf008207m Mimulus guttatus mgf008207m I 0.000
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.000
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.000
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.000
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.000
OBART01G39540 Oryza barthii OBART01G39540 I 0.000
OBART05G17040 Oryza barthii OBART05G17040 I 0.000
OBART06G27230 Oryza barthii OBART06G27230 I 0.000
OB01G48280 Oryza brachyantha OB01G48280 I 0.000
OB05G24910 Oryza brachyantha OB05G24910 I 0.000
OB06G35020 Oryza brachyantha OB06G35020 I 0.000
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.000
ORGLA05G0147400 Oryza glaberrima ORGLA05G0147400 I 0.000
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.000
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.000
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.000
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.000
BGIOSGA019900 Oryza indica BGIOSGA019900 I 0.000
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.000
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.000
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.000
OLONG_005253 Oryza longistaminata OLONG_005253 I 0.000
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.000
OMERI05G14780 Oryza meridionalis OMERI05G14780 I 0.000
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.000
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.000
ONIVA05G17790 Oryza nivara ONIVA05G17790 I 0.000
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.000
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.000
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.000
ORUFI05G18270 Oryza rufipogon ORUFI05G18270 I 0.000
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.000
MADS2 Oryza sativa OS01G0883100 D 0.000
MADS4 Oryza sativa OS05G0423400 I 0.000
MADS16 Oryza sativa OS06G0712700 D 0.000
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.000
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.000
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.000
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.000
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.000
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.000
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.000
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.000
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.000
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.000
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.000
Pm004718 Prunus mume Pm004718 I 0.000
Pm006266 Prunus mume Pm006266 I 0.000
Pm026712 Prunus mume Pm026712 I 0.000
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.000
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.000
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.000
29648.m001978 Ricinus communis 29648.m001978 I 0.000
29782.m000119 Ricinus communis 29782.m000119 I 0.000
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.000
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.000
Si002929m.g Setaria italica Si002929m.g I 0.000
Si018183m.g Setaria italica Si018183m.g I 0.000
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.000
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.000
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.000
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.000
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.000
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.000
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.000
Sb09g020770 Sorghum bicolor Sb09g020770 I 0.000
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.000
TCM_000266 Theobroma cacao TCM_000266 I 0.000
TCM_035212 Theobroma cacao TCM_035212 I 0.000
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.000
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.000
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.000
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.000
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.000
PI Vitis vinifera VIT_18s0001g01760 I 0.000
AP3 Vitis vinifera VIT_18s0001g13460 I 0.000
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.000
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.000
M17_MAIZE Zea mays M17_MAIZE D 0.000