PRDM6 (Tupaia belangeri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTBEG00000010088 T111190_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 1.000
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000008731 C2H2 ZF 475 496
ENSTBEP00000008731 C2H2 ZF 503 525
ENSTBEP00000008731 C2H2 ZF 531 553
ENSTBEP00000008731 C2H2 ZF 559 580

Links

Other C2H2 ZF family TFs
Other Tupaia belangeri TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
SCL21 Arabidopsis thaliana AT2G04890 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Bo2g149670 Brassica oleracea Bo2g149670 N 0.000
Bo7g089080 Brassica oleracea Bo7g089080 N 0.000
Bo9g009240 Brassica oleracea Bo9g009240 N 0.000
Bo9g009260 Brassica oleracea Bo9g009260 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
PK09018.1 Cannabis sativa PK09018.1 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000