MESCA002030 (Megaselia scalaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MESCA002030 T220543_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.778 0.543
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.778 0.543
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.778 0.543
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.778 0.543
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.778 0.543
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.778 0.543
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.778 0.543
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.778 0.543
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.778 0.543
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.744 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.744 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.744 0.370
otp
M03834_2.00 		Drosophila melanogaster
BTAATTRN
NYAATTAV		 SELEX
Nitta et al.(2015)
otp_1 		0.377 1.000
otp
M03835_2.00 		Drosophila melanogaster
YTAATTRV
BYAATTAR		 SELEX
Nitta et al.(2015)
otp_2 		0.377 1.000
otp
M06516_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0236.1 		0.377 1.000
otp
M06309_2.00 		Drosophila melanogaster
HYTAATTA
TAATTARD		 B1H
Zhu et al.(2011)
Otp_Cell_FBgn0015524 		0.377 1.000
otp
M06310_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
Otp_SOLEXA_FBgn0015524 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MESCA002030-PA Homeodomain 67 112

Links

Other Homeodomain family TFs
Other Megaselia scalaris TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.000
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.000
SCL3 Arabidopsis thaliana AT1G50420 N 0.000
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.000
Bo3g179450 Brassica oleracea Bo3g179450 N 0.000
Bo6g022200 Brassica oleracea Bo6g022200 N 0.000
Bra018848 Brassica rapa Bra018848 N 0.000
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.000
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.000
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.000
Ca_27441 Cicer arietinum Ca_27441 N 0.000
Ca_11133 Cicer arietinum Ca_11133 N 0.000
Cla006433 Citrullus lanatus Cla006433 N 0.000
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.000
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.000
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.000
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.000
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.000
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.000
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.000
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.000
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.000
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.000
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.000
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.000
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.000
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.000
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.000
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.000
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.000
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.000
Pm012190 Prunus mume Pm012190 N 0.000
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.000
30024.m001746 Ricinus communis 30024.m001746 N 0.000
30131.m007244 Ricinus communis 30131.m007244 N 0.000
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.000
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.000
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.000
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.000
TCM_042392 Theobroma cacao TCM_042392 N 0.000
TCM_040833 Theobroma cacao TCM_040833 N 0.000
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.000