maker-nMf.1.1.scaf10537-augustus-gene-0.4 (Meloidogyne floridensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 maker-nMf.1.1.scaf10537-augustus-gene-0.4 T235051_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.823 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.823 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.823 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.823 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.823 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.823 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.823 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.823 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.823 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf10537-augustus-gene-0.4-mRNA-1 Homeodomain 150 196

Links

Other Homeodomain family TFs
Other Meloidogyne floridensis TFs

1245 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32978 Aegilops tauschii F775_32978 I
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I
ARF17 Arabidopsis lyrata scaffold_202748.1 N
ARF16 Arabidopsis lyrata scaffold_701217.1 I
ARF17 Arabidopsis thaliana AT1G77850 N
ARF10 Arabidopsis thaliana AT2G28350 I
ARF16 Arabidopsis thaliana AT4G30080 D
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I
Bo1g014600 Brassica oleracea Bo1g014600 I
Bo4g071620 Brassica oleracea Bo4g071620 I
Bo6g081980 Brassica oleracea Bo6g081980 N
Bo6g121520 Brassica oleracea Bo6g121520 N
Bo7g114200 Brassica oleracea Bo7g114200 I
Bra003665 Brassica rapa Bra003665 N
Bra011162 Brassica rapa Bra011162 I
Bra011955 Brassica rapa Bra011955 I
Bra015651 Brassica rapa Bra015651 N
Bra024109 Brassica rapa Bra024109 I
PK13064.1 Cannabis sativa PK13064.1 I
PK17007.1 Cannabis sativa PK17007.1 I
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I
Cagra.24523s0002 Capsella grandiflora Cagra.24523s0002 N
Carubv10004220m.g Capsella rubella Carubv10004220m.g I
Carubv10019991m.g Capsella rubella Carubv10019991m.g N
Carubv10022755m.g Capsella rubella Carubv10022755m.g I
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I
Ca_02541 Cicer arietinum Ca_02541 I
Ca_11175 Cicer arietinum Ca_11175 N
Ca_26121 Cicer arietinum Ca_26121 I
Cla008883 Citrullus lanatus Cla008883 I
Cla013979 Citrullus lanatus Cla013979 I
Cla018574 Citrullus lanatus Cla018574 I
Cla022413 Citrullus lanatus Cla022413 I
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I
Cucsa.124410 Cucumis sativus Cucsa.124410 I
Cucsa.137650 Cucumis sativus Cucsa.137650 I
Cucsa.381330 Cucumis sativus Cucsa.381330 I
Cucsa.386060 Cucumis sativus Cucsa.386060 I
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I
GLYMA04G43350 Glycine max GLYMA04G43350 N
GLYMA11G20490 Glycine max GLYMA11G20490 I
GLYMA12G08110 Glycine max GLYMA12G08110 I
GLYMA12G29720 Glycine max GLYMA12G29720 I
GLYMA13G02410 Glycine max GLYMA13G02410 N
GLYMA13G20382 Glycine max GLYMA13G20382 I
GLYMA13G40030 Glycine max GLYMA13G40030 I
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I
MLOC_64795 Hordeum vulgare MLOC_64795 I
MLOC_77438 Hordeum vulgare MLOC_77438 I
LPERR02G20290 Leersia perrieri LPERR02G20290 I
LPERR04G15300 Leersia perrieri LPERR04G15300 I
LPERR06G21020 Leersia perrieri LPERR06G21020 I
LPERR10G09970 Leersia perrieri LPERR10G09970 I
Lus10009770.g Linum usitatissimum Lus10009770.g N
Lus10016091.g Linum usitatissimum Lus10016091.g I
Lus10019940.g Linum usitatissimum Lus10019940.g I
Lus10021467.g Linum usitatissimum Lus10021467.g I
Lus10023519.g Linum usitatissimum Lus10023519.g I
Lus10024753.g Linum usitatissimum Lus10024753.g N
Lus10024754.g Linum usitatissimum Lus10024754.g N
Lus10026510.g Linum usitatissimum Lus10026510.g I
Lus10040403.g Linum usitatissimum Lus10040403.g I
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I
MDP0000131481 Malus domestica MDP0000131481 I
MDP0000221322 Malus domestica MDP0000221322 I
MDP0000232116 Malus domestica MDP0000232116 N
MDP0000256621 Malus domestica MDP0000256621 I
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I
MTR_1g094960 Medicago truncatula MTR_1g094960 I
MTR_2g094570 Medicago truncatula MTR_2g094570 I
MTR_3g073420 Medicago truncatula MTR_3g073420 N
MTR_4g058930 Medicago truncatula MTR_4g058930 I
mgf000336m Mimulus guttatus mgf000336m I
mgf005300m Mimulus guttatus mgf005300m I
mgf016139m Mimulus guttatus mgf016139m I
mgf024607m Mimulus guttatus mgf024607m I
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I
OBART04G18910 Oryza barthii OBART04G18910 I
OBART06G25230 Oryza barthii OBART06G25230 I
OBART10G13410 Oryza barthii OBART10G13410 I
OB02G32150 Oryza brachyantha OB02G32150 I
OB06G32920 Oryza brachyantha OB06G32920 I
OB10G20590 Oryza brachyantha OB10G20590 I
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I
BGIOSGA008657 Oryza indica BGIOSGA008657 I
ARF10 Oryza indica BGIOSGA016767 I
BGIOSGA033142 Oryza indica BGIOSGA033142 I
OLONG_021130 Oryza longistaminata OLONG_021130 I
OMERI02G24320 Oryza meridionalis OMERI02G24320 I
OMERI04G15770 Oryza meridionalis OMERI04G15770 I
OMERI06G25370 Oryza meridionalis OMERI06G25370 I
OMERI10G10210 Oryza meridionalis OMERI10G10210 I
ONIVA02G27180 Oryza nivara ONIVA02G27180 I
ONIVA04G29840 Oryza nivara ONIVA04G29840 N
ONIVA06G28270 Oryza nivara ONIVA06G28270 I
ONIVA06G31350 Oryza nivara ONIVA06G31350 I
ONIVA10G14700 Oryza nivara ONIVA10G14700 I
OPUNC02G22610 Oryza punctata OPUNC02G22610 I
OPUNC04G16630 Oryza punctata OPUNC04G16630 I
OPUNC06G22960 Oryza punctata OPUNC06G22960 I
OPUNC10G11840 Oryza punctata OPUNC10G11840 I
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I
ARF8 Oryza sativa OS02G0628600 I
OS04G0519700 Oryza sativa OS04G0519700 I
ARF18 Oryza sativa OS06G0685700 I
ARF22 Oryza sativa OS10G0479900 I
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I
Pavir.J24081 Panicum virgatum Pavir.J24081 I
Pavir.J26437 Panicum virgatum Pavir.J26437 I
Pavir.J37640 Panicum virgatum Pavir.J37640 I
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I
Pm018533 Prunus mume Pm018533 I
Pm019126 Prunus mume Pm019126 I
Pm030120 Prunus mume Pm030120 I
Pm031275 Prunus mume Pm031275 I
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I
27494.m000045 Ricinus communis 27494.m000045 I
27538.m000327 Ricinus communis 27538.m000327 I
29908.m005953 Ricinus communis 29908.m005953 I
30078.m002329 Ricinus communis 30078.m002329 I
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I
Si005991m.g Setaria italica Si005991m.g I
Si009541m.g Setaria italica Si009541m.g I
Si016509m.g Setaria italica Si016509m.g I
Si034525m.g Setaria italica Si034525m.g I
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N
Sb01g019130 Sorghum bicolor Sb01g019130 I
Sb04g026610 Sorghum bicolor Sb04g026610 I
Sb10g027790 Sorghum bicolor Sb10g027790 I
TCM_022163 Theobroma cacao TCM_022163 I
TCM_035002 Theobroma cacao TCM_035002 I
TCM_042067 Theobroma cacao TCM_042067 I
TCM_043157 Theobroma cacao TCM_043157 I
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I
ARF10 Vitis vinifera VIT_06s0004g02750 I
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I
AC207656.3_FG002 Zea mays AC207656.3_FG002 I
GRMZM2G081406 Zea mays GRMZM2G081406 I
GRMZM2G153233 Zea mays GRMZM2G153233 I
GRMZM2G159399 Zea mays GRMZM2G159399 I
GRMZM2G390641 Zea mays GRMZM2G390641 I