Bo5g002430 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo5g002430 T267348_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.872 0.913
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.864 0.891
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.864 0.891
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.864 0.891
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.864 0.891
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.864 0.891
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.862 0.891
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.862 0.891
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.862 0.891
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.842 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.828 0.935
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.828 0.935
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.828 0.935
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.700 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g002430.1 Myb 48 93

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

325 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N
SIGC Arabidopsis thaliana AT3G53920 N
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N
Bo4g120510 Brassica oleracea Bo4g120510 N
Bra014857 Brassica rapa Bra014857 N
PK05603.1 Cannabis sativa PK05603.1 N
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N
Carubv10016920m.g Capsella rubella Carubv10016920m.g N
Ca_14896 Cicer arietinum Ca_14896 N
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N
GLYMA17G26620 Glycine max GLYMA17G26620 N
GLYMA14G22170 Glycine max GLYMA14G22170 N
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N
MDP0000315125 Malus domestica MDP0000315125 N
MDP0000135483 Malus domestica MDP0000135483 N
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N
MTR_1g007370 Medicago truncatula MTR_1g007370 N
mgf012819m Mimulus guttatus mgf012819m N
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N
Pm005208 Prunus mume Pm005208 N
Pm005207 Prunus mume Pm005207 N
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N
29794.m003368 Ricinus communis 29794.m003368 N
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N
TCM_037242 Theobroma cacao TCM_037242 N
SIGC Vitis vinifera VIT_04s0008g00600 N