CBG01353 (Caenorhabditis briggsae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBG01353 T301436_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-182
M00701_2.00 		Caenorhabditis elegans
DWBYGTGWCH
DGWCACRVWH		 PBM
Narasimhan et al.(2015)
pTH10779 		0.841 0.543
nhr-182
M00702_2.00 		Caenorhabditis elegans
NNNHRTRNHN
NDNYAYDNNN		 PBM
Narasimhan et al.(2015)
pTH6106 		0.841 0.543
nhr-177
M02419_2.00 		Caenorhabditis elegans
TCGRGANY
RNTCYCGA		 PBM
Weirauch et al.(2014)
pTH9044 		0.802 0.486
CBG01250
M02391_2.00 		Caenorhabditis briggsae
WBYGTGTC
GACACRVW		 PBM
Weirauch et al.(2014)
pTH6110 		0.771 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG01353 Nuclear receptor 26 95

Links

Other Nuclear receptor family TFs
Other Caenorhabditis briggsae TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00003p00264810 Amborella trichopoda AMTR_s00003p00264810 N
Aquca_008_00040 Aquilegia coerulea Aquca_008_00040 N
ULT1 Arabidopsis lyrata fgenesh2_kg.7__1389__AT4G28190.1 N
Bostr.7867s0654 Boechera stricta Bostr.7867s0654 N
Bo1g051270 Brassica oleracea Bo1g051270 N
Bo7g111950 Brassica oleracea Bo7g111950 N
Bra026276 Brassica rapa Bra026276 N
PK16281.1 Cannabis sativa PK16281.1 N
Cagra.1225s0078 Capsella grandiflora Cagra.1225s0078 N
Carubv10005638m.g Capsella rubella Carubv10005638m.g N
evm.TU.supercontig_34.111 Carica papaya evm.TU.supercontig_34.111 N
Ca_19014 Cicer arietinum Ca_19014 N
Cla007849 Citrullus lanatus Cla007849 N
Cucsa.147930 Cucumis sativus Cucsa.147930 N
Eucgr.K00939 Eucalyptus grandis Eucgr.K00939 N
gene10278-v1.0-hybrid Fragaria vesca gene10278-v1.0-hybrid N
GLYMA12G11800 Glycine max GLYMA12G11800 N
GLYMA06G45180 Glycine max GLYMA06G45180 N
Gorai.005G204800 Gossypium raimondii Gorai.005G204800 N
Gorai.008G152400 Gossypium raimondii Gorai.008G152400 N
Lus10018560.g Linum usitatissimum Lus10018560.g N
Lus10039791.g Linum usitatissimum Lus10039791.g N
chr3.CM0711.550.nd Lotus japonicus chr3.CM0711.550.nd N
MDP0000315130 Malus domestica MDP0000315130 N
MDP0000237588 Malus domestica MDP0000237588 N
MDP0000089136 Malus domestica MDP0000089136 N
cassava12533.valid.m1 Manihot esculenta cassava12533.valid.m1 N
cassava18740.valid.m1 Manihot esculenta cassava18740.valid.m1 N
MTR_0072s0040 Medicago truncatula MTR_0072s0040 N
GSMUA_AchrUn_randomG13850_001 Musa acuminata GSMUA_AchrUn_randomG13850_001 N
GSMUA_Achr1G08820_001 Musa acuminata GSMUA_Achr1G08820_001 N
GSMUA_Achr2G02900_001 Musa acuminata GSMUA_Achr2G02900_001 N
POPTR_0013s14170 Populus trichocarpa POPTR_0013s14170 N
POPTR_0019s13550 Populus trichocarpa POPTR_0019s13550 N
Pm015354 Prunus mume Pm015354 N
PRUPE_ppa017439mg Prunus persica PRUPE_ppa017439mg N
29983.m003255 Ricinus communis 29983.m003255 N
SapurV1A.0048s0510 Salix purpurea SapurV1A.0048s0510 N
SapurV1A.0492s0170 Salix purpurea SapurV1A.0492s0170 N
SapurV1A.2807s0020 Salix purpurea SapurV1A.2807s0020 N
Sb03g036430 Sorghum bicolor Sb03g036430 N
TCM_007971 Theobroma cacao TCM_007971 N
GRMZM2G082745 Zea mays GRMZM2G082745 N
GRMZM2G004690 Zea mays GRMZM2G004690 N