MLOC_57503 (Hordeum vulgare)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MLOC_57503 T322722_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.956 0.840
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.950 0.827
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.930 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_57503.1 SBP 5 39
MLOC_57503.2 SBP 34 109

Links

Other SBP family TFs
Other Hordeum vulgare TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.896
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.922
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.925
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.930
SPL8 Arabidopsis thaliana AT1G02065 D 0.930
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.930
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.939
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.923
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.990
Bo5g001290 Brassica oleracea Bo5g001290 I 0.930
Bo8g118210 Brassica oleracea Bo8g118210 I 0.930
Bra032662 Brassica rapa Bra032662 I 0.930
Bra033221 Brassica rapa Bra033221 I 0.930
PK25779.1 Cannabis sativa PK25779.1 I 0.926
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.930
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.930
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.927
Ca_18942 Cicer arietinum Ca_18942 I 0.926
Cla006776 Citrullus lanatus Cla006776 I 0.923
Cla020006 Citrullus lanatus Cla020006 I 0.896
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.927
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.927
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.927
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.930
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.926
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.943
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.926
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.926
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.893
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.923
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.913
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.927
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.927
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.890
MLOC_326 Hordeum vulgare MLOC_326 I 0.929
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.918
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.933
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.990
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.929
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.920
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.918
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.912
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.936
MDP0000803116 Malus domestica MDP0000803116 I 0.924
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.893
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.927
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.929
mgf011616m Mimulus guttatus mgf011616m I 0.907
mgf016085m Mimulus guttatus mgf016085m I 0.925
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.922
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.897
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.916
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.922
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.906
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.892
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.942
OBART04G27990 Oryza barthii OBART04G27990 I 0.990
OBART06G23500 Oryza barthii OBART06G23500 I 0.903
OB02G15090 Oryza brachyantha OB02G15090 I 0.933
OB04G34990 Oryza brachyantha OB04G34990 I 0.990
OB06G31100 Oryza brachyantha OB06G31100 I 0.929
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.900
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.990
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.929
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.990
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.929
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.900
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.990
SPL10 Oryza indica BGIOSGA023408 I 0.929
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.990
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.900
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.990
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.929
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.929
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.990
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.924
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.990
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.929
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.990
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.929
SPL5 Oryza sativa OS02G0177300 I 0.900
SPL8 Oryza sativa OS04G0656500 I 0.990
SPL10 Oryza sativa OS06G0659100 I 0.929
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.954
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.929
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.929
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.990
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.990
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.904
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.950
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.886
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.956
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.951
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.985
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.927
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.892
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.927
Pm017777 Prunus mume Pm017777 I 0.890
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.890
30174.m008803 Ricinus communis 30174.m008803 I 0.927
30190.m011329 Ricinus communis 30190.m011329 I 0.940
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.914
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.927
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.942
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.917
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.921
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.942
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.952
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.952
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.921
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.917
Si006559m.g Setaria italica Si006559m.g I 0.929
Si017338m.g Setaria italica Si017338m.g I 0.899
Si022315m.g Setaria italica Si022315m.g I 0.990
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.926
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.926
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.926
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.926
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.923
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.990
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.929
TCM_005622 Theobroma cacao TCM_005622 I 0.927
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.890
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.889
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.929
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.890
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.990
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.888
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.916
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.924
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.914
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.990
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.990
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.926
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.923
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.899