fgenesh1_pg.scaffold_118000004 (Physcomitrella patens)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 fgenesh1_pg.scaffold_118000004 T323291_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.962 0.880
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.958 0.880
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.912 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_118000004 SBP 372 446

Links

Other SBP family TFs
Other Physcomitrella patens TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.925
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.936
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.912
SPL8 Arabidopsis thaliana AT1G02065 D 0.912
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.912
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.933
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.926
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.904
Bo5g001290 Brassica oleracea Bo5g001290 I 0.912
Bo8g118210 Brassica oleracea Bo8g118210 I 0.912
Bra032662 Brassica rapa Bra032662 I 0.912
Bra033221 Brassica rapa Bra033221 I 0.912
PK02140.1 Cannabis sativa PK02140.1 I 0.911
PK25779.1 Cannabis sativa PK25779.1 I 0.919
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.912
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.912
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.890
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.919
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.886
Ca_01426 Cicer arietinum Ca_01426 I 0.907
Ca_05711 Cicer arietinum Ca_05711 I 0.912
Ca_18942 Cicer arietinum Ca_18942 I 0.919
Cla002666 Citrullus lanatus Cla002666 I 0.914
Cla006776 Citrullus lanatus Cla006776 I 0.919
Cla019579 Citrullus lanatus Cla019579 I 0.895
Cla020006 Citrullus lanatus Cla020006 I 0.902
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.919
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.889
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.909
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.889
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.919
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.892
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.900
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.910
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.914
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.919
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.912
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.886
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.918
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.916
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.891
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.911
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.919
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.907
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.907
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.919
GLYMA12G35460 Glycine max GLYMA12G35460 I 0.887
GLYMA13G35000 Glycine max GLYMA13G35000 I 0.887
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.909
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.919
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.919
MLOC_326 Hordeum vulgare MLOC_326 I 0.932
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.928
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.904
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.886
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.924
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.904
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.932
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.918
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.916
MDP0000803116 Malus domestica MDP0000803116 I 0.917
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.919
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.919
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.907
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.922
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.912
mgf016085m Mimulus guttatus mgf016085m I 0.917
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.937
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.922
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.945
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.944
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.934
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.929
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.895
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.954
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.955
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.896
OBART04G27990 Oryza barthii OBART04G27990 I 0.904
OBART06G23500 Oryza barthii OBART06G23500 I 0.902
OB02G15090 Oryza brachyantha OB02G15090 I 0.924
OB04G34990 Oryza brachyantha OB04G34990 I 0.904
OB06G31100 Oryza brachyantha OB06G31100 I 0.932
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.928
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.904
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.932
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.904
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.932
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.928
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.904
SPL10 Oryza indica BGIOSGA023408 I 0.932
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.904
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.928
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.904
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.932
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.932
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.904
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.921
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.904
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.932
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.904
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.932
SPL5 Oryza sativa OS02G0177300 I 0.928
SPL8 Oryza sativa OS04G0656500 I 0.904
SPL10 Oryza sativa OS06G0659100 I 0.932
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.894
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.932
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.932
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.904
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.904
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.958
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.950
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.962
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.924
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.925
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.919
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.886
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.914
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.919
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.915
Pm024528 Prunus mume Pm024528 I 0.914
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.914
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.887
30174.m008803 Ricinus communis 30174.m008803 I 0.919
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.916
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.908
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.892
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.919
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.908
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.937
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.980
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.974
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.937
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.956
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.956
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.974
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.979
Si006559m.g Setaria italica Si006559m.g I 0.932
Si017338m.g Setaria italica Si017338m.g I 0.933
Si022315m.g Setaria italica Si022315m.g I 0.904
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.919
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.919
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.919
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.919
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.926
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.904
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.932
TCM_005622 Theobroma cacao TCM_005622 I 0.919
TCM_014668 Theobroma cacao TCM_014668 I 0.890
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.905
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.932
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.904
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.920
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.916
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.928
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.904
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.901
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.932
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.926
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.933