SIGC (Arabidopsis lyrata)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 Al_scaffold_0005_2291 T323746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0005_2291 Sigma 70 333 403

Links

Other Sigma 70 family TFs
Other Arabidopsis lyrata TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.746
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.775
SIGC Arabidopsis thaliana AT3G53920 N 0.972
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 1.000
Bo4g120510 Brassica oleracea Bo4g120510 N 0.972
Bra014857 Brassica rapa Bra014857 N 0.944
PK05603.1 Cannabis sativa PK05603.1 N 0.761
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.972
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.972
Ca_14896 Cicer arietinum Ca_14896 N 0.789
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.859
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.859
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.859
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.972
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.761
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.789
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.732
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.831
MDP0000135483 Malus domestica MDP0000135483 N 0.718
MDP0000315125 Malus domestica MDP0000315125 N 0.718
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.817
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.761
mgf012819m Mimulus guttatus mgf012819m N 0.803
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.718
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.718
Pm005208 Prunus mume Pm005208 N 0.789
Pm005207 Prunus mume Pm005207 N 0.791
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.775
29794.m003368 Ricinus communis 29794.m003368 N 0.817
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.775
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.845
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.845
TCM_037242 Theobroma cacao TCM_037242 N 0.845
SIGC Vitis vinifera VIT_04s0008g00600 N 0.775