Bo5g002600 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo5g002600 T000828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.822 0.980
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.822 0.980
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.682 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g002600.1 AP2 40 91

Links

Other AP2 family TFs
Other Brassica oleracea TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.835
Bra033274 Brassica rapa Bra033274 I 0.835
Bo8g117810 Brassica oleracea Bo8g117810 I 0.831
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.822
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.822
ERF023 Arabidopsis thaliana AT1G01250 D 0.822
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.822
Bra032630 Brassica rapa Bra032630 I 0.818
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.816
Ca_17638 Cicer arietinum Ca_17638 I 0.804
TCM_005130 Theobroma cacao TCM_005130 I 0.801
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.801
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.798
PK15554.1 Cannabis sativa PK15554.1 I 0.798
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.798
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.798
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.796
Pm018354 Prunus mume Pm018354 I 0.794
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.794
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.789
29742.m001400 Ricinus communis 29742.m001400 I 0.789
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.789
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.788
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.788
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.788
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.785
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.785
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.785
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.785
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.779
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.774
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.772
mgf020568m Mimulus guttatus mgf020568m I 0.769
Ca_01325 Cicer arietinum Ca_01325 I 0.768
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.765
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.764
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.762
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.745
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.682
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.678
TCM_036269 Theobroma cacao TCM_036269 I 0.678
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.677
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.677