29742.m001400 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 29742.m001400 T006714_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.803 0.940
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.803 0.940
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.679 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29742.m001400 AP2 43 94

Links

Other AP2 family TFs
Other Ricinus communis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.841
Pm018354 Prunus mume Pm018354 I 0.829
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.829
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.829
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.829
PK15554.1 Cannabis sativa PK15554.1 I 0.829
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.829
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.824
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.819
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.819
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.819
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.817
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.816
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.816
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.816
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.816
TCM_005130 Theobroma cacao TCM_005130 I 0.816
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.816
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.814
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.809
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.805
mgf020568m Mimulus guttatus mgf020568m I 0.804
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.803
ERF023 Arabidopsis thaliana AT1G01250 D 0.803
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.803
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.803
Ca_17638 Cicer arietinum Ca_17638 I 0.801
Bra032630 Brassica rapa Bra032630 I 0.799
Ca_01325 Cicer arietinum Ca_01325 I 0.799
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.797
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.797
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.795
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.795
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.789
Bra033274 Brassica rapa Bra033274 I 0.789
Bo5g002600 Brassica oleracea Bo5g002600 I 0.789
Bo8g117810 Brassica oleracea Bo8g117810 I 0.786
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.750
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.695
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.682
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.681
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.681
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.679