evm.TU.supercontig_1288.2 (Carica papaya)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 evm.TU.supercontig_1288.2 T008262_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
abi4
M02648_2.00 		Zea mays
CGSYGCYBYB
VRVRGCRSCG		 SELEX
Mathelier et al.(2014)
MA0123.1 		0.745 0.900
abi4
M09706_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI4_01 		0.745 0.900
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.677 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_1288.2 AP2 70 121

Links

Other AP2 family TFs
Other Carica papaya TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.775
Ca_12465 Cicer arietinum Ca_12465 I 0.774
Lus10009834.g Linum usitatissimum Lus10009834.g I 0.774
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.774
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.773
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.767
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.767
Cla006708 Citrullus lanatus Cla006708 I 0.767
MDP0000628484 Malus domestica MDP0000628484 I 0.767
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.765
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.763
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.762
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.762
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.758
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.757
TCM_042471 Theobroma cacao TCM_042471 I 0.757
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.757
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.757
MDP0000225376 Malus domestica MDP0000225376 I 0.757
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.757
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.757
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.757
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.757
29814.m000739 Ricinus communis 29814.m000739 I 0.757
cassava41265.m1 Manihot esculenta cassava41265.m1 I 0.757
Pm018953 Prunus mume Pm018953 I 0.757
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.757
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.757
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.757
mgf024416m Mimulus guttatus mgf024416m I 0.754
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.751
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.748
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.745
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.745
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I 0.745
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.745
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.745
abi4 Zea mays GRMZM2G093595 D 0.745
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.745
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.745
ABI4 Oryza sativa OS05G0351200 I 0.745
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.745
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.745
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.745
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.745
Bo4g025410 Brassica oleracea Bo4g025410 I 0.744
Bra000178 Brassica rapa Bra000178 I 0.744
Bo3g034810 Brassica oleracea Bo3g034810 I 0.744
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.744
Bra004978 Brassica rapa Bra004978 I 0.744
ABI4 Arabidopsis thaliana AT2G40220 I 0.741
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.741
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.741
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I 0.741
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.741
Bo6g073020 Brassica oleracea Bo6g073020 I 0.700
Bra014617 Brassica rapa Bra014617 I 0.694
Bo4g111040 Brassica oleracea Bo4g111040 I 0.694
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.690
Bra007341 Brassica rapa Bra007341 I 0.690
Bo8g092010 Brassica oleracea Bo8g092010 I 0.690
Cla017778 Citrullus lanatus Cla017778 I 0.680
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.680
DREB2F Arabidopsis thaliana AT3G57600 D 0.677
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.677
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.677
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.677
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.677