Bra014617 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra014617 T001084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.799 0.940
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.740 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014617.1-P AP2 26 77

Links

Other AP2 family TFs
Other Brassica rapa TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g111040 Brassica oleracea Bo4g111040 I 0.820
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.812
Bo6g073020 Brassica oleracea Bo6g073020 I 0.804
Bra007341 Brassica rapa Bra007341 I 0.801
Bo8g092010 Brassica oleracea Bo8g092010 I 0.801
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.799
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.799
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.799
DREB2F Arabidopsis thaliana AT3G57600 D 0.799
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.799
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.755
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.755
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.755
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.755
TCM_024756 Theobroma cacao TCM_024756 I 0.753
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.753
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.753
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.752
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.752
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.752
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.751
Ca_07264 Cicer arietinum Ca_07264 I 0.750
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.750
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.750
27810.m000639 Ricinus communis 27810.m000639 I 0.750
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.750
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.750
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.750
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.750
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.750
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.750
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.750
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.750
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.749
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.747
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.746
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.746
OBART03G05550 Oryza barthii OBART03G05550 I 0.746
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.746
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.746
MDP0000703626 Malus domestica MDP0000703626 I 0.746
MDP0000871361 Malus domestica MDP0000871361 I 0.746
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.746
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.746
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.746
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.746
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.746
DREB2E Oryza sativa OS03G0174400 I 0.746
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.746
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.746
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.746
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.746
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.746
Pm025865 Prunus mume Pm025865 I 0.746
Cla017778 Citrullus lanatus Cla017778 I 0.744
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.742
PK08602.1 Cannabis sativa PK08602.1 D 0.740
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.740
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.739
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.738
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.737
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.737
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.736
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.736
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.735
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.708
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.706
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.694
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.685
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.685
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.682
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.678
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.678