POPTR_0001s27680 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0001s27680 T043752_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN

NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.846 0.816
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s27680.1 bHLH 345 393

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla015469 Citrullus lanatus Cla015469 I 0.903
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.891
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.890
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.873
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.873
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.870
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.867
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.867
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.861
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.860
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.860
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.860
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.860
30152.m002405 Ricinus communis 30152.m002405 I 0.860
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.860
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.858
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.858
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.858
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.858
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.858
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.858
mgf016734m Mimulus guttatus mgf016734m I 0.858
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.858
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.858
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.858
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.858
Pm000447 Prunus mume Pm000447 I 0.858
Cla017792 Citrullus lanatus Cla017792 I 0.858
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.858
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.858
Pm025821 Prunus mume Pm025821 I 0.858
29216.m000261 Ricinus communis 29216.m000261 I 0.858
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.858
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.858
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.858
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.858
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.858
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.858
MDP0000180376 Malus domestica MDP0000180376 I 0.858
TCM_024842 Theobroma cacao TCM_024842 I 0.858
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.858
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.858
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.858
PK18038.1 Cannabis sativa PK18038.1 I 0.858
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.858
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.858
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.858
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.858
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.858
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.858
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.858
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.858
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.858
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.858
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.855
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.855
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.855
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.855
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.855
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.855
OB02G30670 Oryza brachyantha OB02G30670 I 0.855
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.855
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.855
OBART02G23210 Oryza barthii OBART02G23210 I 0.855
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.855
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.855
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.855
Si010513m.g Setaria italica Si010513m.g I 0.855
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.855
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.855
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.855
Si017194m.g Setaria italica Si017194m.g I 0.855
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.855
GLYMA15G42680 Glycine max GLYMA15G42680 I 0.848
mgf018372m Mimulus guttatus mgf018372m N 0.848
Ca_26916 Cicer arietinum Ca_26916 I 0.848
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.846
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.846
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.846
OBART08G19860 Oryza barthii OBART08G19860 I 0.846
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.846
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.846
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.846
OB08G26810 Oryza brachyantha OB08G26810 I 0.846
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.846
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.846
F775_24151 Aegilops tauschii F775_24151 I 0.846
OBART09G14660 Oryza barthii OBART09G14660 I 0.846
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.846
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.846
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.846
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.846
OS08G0506700 Oryza sativa OS08G0506700 D 0.846
OS09G0487900 Oryza sativa OS09G0487900 I 0.846
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.846
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.846
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.846
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.846
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.846
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.846
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.846
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.846
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.843
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.843
MTR_3g028520 Medicago truncatula MTR_3g028520 I 0.841
chr3.LjT46L11.40.nc Lotus japonicus chr3.LjT46L11.40.nc N 0.841
GLYMA13G27455 Glycine max GLYMA13G27455 I 0.841
MTR_3g027650 Medicago truncatula MTR_3g027650 I 0.841
GLYMA12G36750 Glycine max GLYMA12G36750 I 0.841
evm.TU.contig_45766 Carica papaya evm.TU.contig_45766 I 0.839
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.839
TCM_005925 Theobroma cacao TCM_005925 I 0.839
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.838
30149.m000231 Ricinus communis 30149.m000231 I 0.838