CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.1898s0040
(
Salix purpurea
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
SapurV1A.1898s0040
T051148_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.888
0.857
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.864
0.816
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.864
0.816
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.846
0.755
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.846
0.755
AT2G42280
M06733_2.00
Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH130_col_a
0.841
0.857
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.1898s0040.1.p
bHLH
348
396
HPRSIAERVRRTRISERMRKLQELFPNIDKQTSTADKLDLAVEHIKDLQ
SapurV1A.1898s0040.2.p
bHLH
348
396
HPRSIAERVRRTRISERMRKLQELFPNIDKQTSTADKLDLAVEHIKDLQ
SapurV1A.1898s0040.3.p
bHLH
348
396
HPRSIAERVRRTRISERMRKLQELFPNIDKQTSTADKLDLAVEHIKDLQ
Links
Other
bHLH
family TFs
Other
Salix purpurea
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.914
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.912
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.902
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.902
30152.m002405
Ricinus communis
30152.m002405
I
0.902
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.902
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.902
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.902
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.899
Pm000447
Prunus mume
Pm000447
I
0.899
Pm025821
Prunus mume
Pm025821
I
0.899
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.899
29216.m000261
Ricinus communis
29216.m000261
I
0.899
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.899
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.899
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.899
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.899
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.899
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.899
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.899
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.899
Cla017792
Citrullus lanatus
Cla017792
I
0.899
mgf016734m
Mimulus guttatus
mgf016734m
I
0.899
MDP0000180376
Malus domestica
MDP0000180376
I
0.899
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.899
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.899
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.899
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.899
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.899
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.899
PK18038.1
Cannabis sativa
PK18038.1
I
0.899
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.899
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.899
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.899
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.899
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.899
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.899
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.899
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.899
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.899
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.899
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.899
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.899
TCM_024842
Theobroma cacao
TCM_024842
I
0.899
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.899
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.897
OBART02G23210
Oryza barthii
OBART02G23210
I
0.897
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.897
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.897
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.897
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.897
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.897
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.897
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.897
OB02G30670
Oryza brachyantha
OB02G30670
I
0.897
OMERI02G22740
Oryza meridionalis
OMERI02G22740
I
0.897
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.897
Pavir.J08536
Panicum virgatum
Pavir.J08536
I
0.897
Si010513m.g
Setaria italica
Si010513m.g
I
0.897
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.897
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.897
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.897
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.897
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.888
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.888
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.888
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.888
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.888
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.888
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.888
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.888
F775_24151
Aegilops tauschii
F775_24151
I
0.888
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.888
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.888
OS08G0506700
Oryza sativa
OS08G0506700
D
0.888
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.888
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.888
OS09G0487900
Oryza sativa
OS09G0487900
I
0.888
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.888
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.888
OBART08G19860
Oryza barthii
OBART08G19860
I
0.888
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.888
OBART09G14660
Oryza barthii
OBART09G14660
I
0.888
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.888
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.888
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.888
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.888
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.888
OB08G26810
Oryza brachyantha
OB08G26810
I
0.888
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.888
GSMUA_Achr6G21220_001
Musa acuminata
GSMUA_Achr6G21220_001
I
0.886
Pavir.Aa01423
Panicum virgatum
Pavir.Aa01423
I
0.886
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.884
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.884
Cla015469
Citrullus lanatus
Cla015469
I
0.884
TCM_005925
Theobroma cacao
TCM_005925
I
0.880
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.880
30149.m000231
Ricinus communis
30149.m000231
I
0.880
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.880
Gorai.011G144600
Gossypium raimondii
Gorai.011G144600
I
0.877
Solyc09g098110.2
Solanum lycopersicum
Solyc09g098110.2
I
0.877
Carubv10023683m.g
Capsella rubella
Carubv10023683m.g
I
0.877
VIT_05s0124g00240
Vitis vinifera
VIT_05s0124g00240
I
0.877
Bo4g019620
Brassica oleracea
Bo4g019620
I
0.877
Pm007619
Prunus mume
Pm007619
I
0.877
Cagra.3706s0004
Capsella grandiflora
Cagra.3706s0004
I
0.877
fgenesh2_kg.4__2475__AT2G43140.1
Arabidopsis lyrata
fgenesh2_kg.4__2475__AT2G43140.1
I
0.877
TCM_020066
Theobroma cacao
TCM_020066
I
0.877
Bostr.25993s0461
Boechera stricta
Bostr.25993s0461
I
0.877
chr5.LjT42F22.20.nc
Lotus japonicus
chr5.LjT42F22.20.nc
I
0.877
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.877
MDP0000273574
Malus domestica
MDP0000273574
I
0.877
GLYMA20G39220
Glycine max
GLYMA20G39220
I
0.877
AT2G43140
Arabidopsis thaliana
AT2G43140
I
0.877
mgf005043m
Mimulus guttatus
mgf005043m
I
0.877
PGSC0003DMG400006569
Solanum tuberosum
PGSC0003DMG400006569
I
0.877
Thhalv10016998m.g
Eutrema salsugineum
Thhalv10016998m.g
I
0.877
Bo3g036400
Brassica oleracea
Bo3g036400
I
0.877
PK07850.1
Cannabis sativa
PK07850.1
I
0.877
Bra004748
Brassica rapa
Bra004748
I
0.877
Bra000291
Brassica rapa
Bra000291
I
0.877
PRUPE_ppa025178mg
Prunus persica
PRUPE_ppa025178mg
I
0.877
SapurV1A.0529s0060
Salix purpurea
SapurV1A.0529s0060
I
0.877
orange1.1g016638m.g
Citrus sinensis
orange1.1g016638m.g
I
0.875
gene26967-v1.0-hybrid
Fragaria vesca
gene26967-v1.0-hybrid
I
0.875
Ciclev10031622m.g
Citrus clementina
Ciclev10031622m.g
I
0.875
POPTR_0001s27680
Populus trichocarpa
POPTR_0001s27680
I
0.873
GLYMA08G16190
Glycine max
GLYMA08G16190
I
0.872
SapurV1A.0027s0090
Salix purpurea
SapurV1A.0027s0090
I
0.872
Cucsa.050160
Cucumis sativus
Cucsa.050160
I
0.872
Eucgr.G03396
Eucalyptus grandis
Eucgr.G03396
I
0.869
GLYMA02G29830
Glycine max
GLYMA02G29830
I
0.869
Si017194m.g
Setaria italica
Si017194m.g
I
0.867
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.865
Cagra.2093s0006
Capsella grandiflora
Cagra.2093s0006
I
0.864
fgenesh2_kg.1__4183__AT1G51140.1
Arabidopsis lyrata
fgenesh2_kg.1__4183__AT1G51140.1
I
0.864
Bostr.26675s0074
Boechera stricta
Bostr.26675s0074
I
0.864
orange1.1g015337m.g
Citrus sinensis
orange1.1g015337m.g
I
0.864
Ciclev10015437m.g
Citrus clementina
Ciclev10015437m.g
I
0.864
Eucgr.B03669
Eucalyptus grandis
Eucgr.B03669
I
0.864
Bra016886
Brassica rapa
Bra016886
I
0.864
GLYMA15G03740
Glycine max
GLYMA15G03740
I
0.864
Bo4g191390
Brassica oleracea
Bo4g191390
I
0.864
Thhalv10011463m.g
Eutrema salsugineum
Thhalv10011463m.g
I
0.864
PK20089.1
Cannabis sativa
PK20089.1
I
0.864
GSMUA_Achr9G27780_001
Musa acuminata
GSMUA_Achr9G27780_001
I
0.864
MTR_2g098310
Medicago truncatula
MTR_2g098310
I
0.864
Bo6g024810
Brassica oleracea
Bo6g024810
I
0.864
BHLH122
Arabidopsis thaliana
AT1G51140
D
0.864
Bra018896
Brassica rapa
Bra018896
I
0.864
GLYMA13G41670
Glycine max
GLYMA13G41670
I
0.864
GLYMA12G05930
Glycine max
GLYMA12G05930
I
0.864
GLYMA11G13960
Glycine max
GLYMA11G13960
I
0.864
Ca_02662
Cicer arietinum
Ca_02662
I
0.864
Ca_14223
Cicer arietinum
Ca_14223
I
0.864
TCM_040564
Theobroma cacao
TCM_040564
I
0.864
Carubv10009458m.g
Capsella rubella
Carubv10009458m.g
I
0.864
Gorai.009G071900
Gossypium raimondii
Gorai.009G071900
I
0.864
chr1.CM0318.250.nd
Lotus japonicus
chr1.CM0318.250.nd
I
0.862
Pm016406
Prunus mume
Pm016406
I
0.862
PRUPE_ppa006134mg
Prunus persica
PRUPE_ppa006134mg
I
0.862
Ca_26916
Cicer arietinum
Ca_26916
I
0.860
mgf018372m
Mimulus guttatus
mgf018372m
N
0.860
GLYMA15G42680
Glycine max
GLYMA15G42680
I
0.860
cassava36544.valid.m1
Manihot esculenta
cassava36544.valid.m1
I
0.856
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.855
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.855
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.854
Eucgr.J00796
Eucalyptus grandis
Eucgr.J00796
I
0.852
GLYMA12G36750
Glycine max
GLYMA12G36750
I
0.852
GLYMA13G27455
Glycine max
GLYMA13G27455
I
0.852
Si029614m.g
Setaria italica
Si029614m.g
I
0.852
GRMZM2G417597
Zea mays
GRMZM2G417597
I
0.852
Sb02g028300
Sorghum bicolor
Sb02g028300
I
0.852
GRMZM2G085467
Zea mays
GRMZM2G085467
I
0.852
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.852
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.852
Pavir.Ba01718
Panicum virgatum
Pavir.Ba01718
I
0.852
GSMUA_Achr3G11110_001
Musa acuminata
GSMUA_Achr3G11110_001
I
0.852
Pavir.J14004
Panicum virgatum
Pavir.J14004
I
0.852
Pavir.J00377
Panicum virgatum
Pavir.J00377
I
0.852
evm.TU.contig_45766
Carica papaya
evm.TU.contig_45766
I
0.850
GLYMA19G32600
Glycine max
GLYMA19G32600
I
0.849
PK06301.1
Cannabis sativa
PK06301.1
I
0.846
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.846
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.846
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.846
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.846
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.846
MDP0000269890
Malus domestica
MDP0000269890
I
0.846
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.846
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.846
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.846
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.846
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.846
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.846
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.846
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.846
mgf002701m
Mimulus guttatus
mgf002701m
I
0.846
Pm004181
Prunus mume
Pm004181
I
0.846
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.846
TCM_036484
Theobroma cacao
TCM_036484
I
0.846
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.846
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.846
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.846
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.846
Bra028088
Brassica rapa
Bra028088
I
0.846
Bra036760
Brassica rapa
Bra036760
I
0.846
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.846
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.846
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.846
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.846
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.846
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.846
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.846
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.846
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.846
PGSC0003DMG400023852
Solanum tuberosum
PGSC0003DMG400023852
I
0.843
PDK_20s1302565g001
Phoenix dactylifera
PDK_20s1302565g001
I
0.843
Solyc12g100140.1
Solanum lycopersicum
Solyc12g100140.1
I
0.843
POPTR_0003s22290
Populus trichocarpa
POPTR_0003s22290
I
0.841
scaffold_403077.1
Arabidopsis lyrata
scaffold_403077.1
I
0.841
AT2G42280
Arabidopsis thaliana
AT2G42280
D
0.841
chr3.LjT46L11.40.nc
Lotus japonicus
chr3.LjT46L11.40.nc
N
0.841
VIT_06s0004g01740
Vitis vinifera
VIT_06s0004g01740
I
0.841
Cagra.2636s0012
Capsella grandiflora
Cagra.2636s0012
I
0.841
Carubv10023498m.g
Capsella rubella
Carubv10023498m.g
I
0.841
MDP0000307685
Malus domestica
MDP0000307685
I
0.841
30169.m006403
Ricinus communis
30169.m006403
I
0.841
SapurV1A.0009s0400
Salix purpurea
SapurV1A.0009s0400
I
0.841
OBART04G16900
Oryza barthii
OBART04G16900
I
0.839
OGLUM04G16920
Oryza glumaepatula
OGLUM04G16920
I
0.839
Bo4g194080
Brassica oleracea
Bo4g194080
N
0.839
MLOC_12058
Hordeum vulgare
MLOC_12058
I
0.839
OMERI04G14260
Oryza meridionalis
OMERI04G14260
I
0.839
OB04G24170
Oryza brachyantha
OB04G24170
I
0.839
LPERR04G13560
Leersia perrieri
LPERR04G13560
I
0.839
OPUNC04G14700
Oryza punctata
OPUNC04G14700
I
0.839
Bra037732
Brassica rapa
Bra037732
N
0.839
BRADI3G48070
Brachypodium distachyon
BRADI3G48070
I
0.839
OS04G0489600
Oryza sativa
OS04G0489600
I
0.839
ORUFI04G18350
Oryza rufipogon
ORUFI04G18350
I
0.839
BGIOSGA016651
Oryza indica
BGIOSGA016651
I
0.839
ORGLA04G0140000
Oryza glaberrima
ORGLA04G0140000
I
0.839
ONIVA04G15000
Oryza nivara
ONIVA04G15000
I
0.839