Ciclev10031622m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10031622m.g T049563_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN

NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.874 0.882
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH

DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.850 0.882
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN

NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.850 0.882
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10031621m bHLH 355 405
Ciclev10031622m bHLH 355 405

Links

Other bHLH family TFs
Other Citrus clementina TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.914
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.914
Pm016406 Prunus mume Pm016406 I 0.901
PRUPE_ppa006134mg Prunus persica PRUPE_ppa006134mg I 0.901
30152.m002405 Ricinus communis 30152.m002405 I 0.888
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.888
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.888
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.888
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.888
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.888
29216.m000261 Ricinus communis 29216.m000261 I 0.885
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.885
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.885
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.885
Pm025821 Prunus mume Pm025821 I 0.885
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.885
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.885
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.885
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.885
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.885
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.885
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.885
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.885
mgf016734m Mimulus guttatus mgf016734m I 0.885
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.885
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.885
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.885
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.885
TCM_024842 Theobroma cacao TCM_024842 I 0.885
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.885
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.885
Cla017792 Citrullus lanatus Cla017792 I 0.885
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.885
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.885
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.885
PK18038.1 Cannabis sativa PK18038.1 I 0.885
MDP0000180376 Malus domestica MDP0000180376 I 0.885
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.885
Pm000447 Prunus mume Pm000447 I 0.885
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.885
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.885
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.885
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.885
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.885
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.885
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.885
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.885
chr1.CM0318.250.nd Lotus japonicus chr1.CM0318.250.nd I 0.876
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.875
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.875
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.874
OS08G0506700 Oryza sativa OS08G0506700 D 0.874
OS09G0487900 Oryza sativa OS09G0487900 I 0.874
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.874
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.874
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.874
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.874
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.874
OB08G26810 Oryza brachyantha OB08G26810 I 0.874
OBART08G19860 Oryza barthii OBART08G19860 I 0.874
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.874
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.874
F775_24151 Aegilops tauschii F775_24151 I 0.874
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.874
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.874
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.874
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.874
OBART09G14660 Oryza barthii OBART09G14660 I 0.874
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.874
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.874
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.874
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.874
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.874
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.874
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.874
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.874
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.874
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.873
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.870
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.870
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.866
TCM_005925 Theobroma cacao TCM_005925 I 0.866
GLYMA19G32600 Glycine max GLYMA19G32600 I 0.863
OBART02G23210 Oryza barthii OBART02G23210 I 0.858
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.858
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.858
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.858
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.858
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.858
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.858
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.858
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.858
MTR_4g033295 Medicago truncatula MTR_4g033295 I 0.858
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.858
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.858
OB02G30670 Oryza brachyantha OB02G30670 I 0.858
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.858
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.858
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.858
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.858
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.858
Si010513m.g Setaria italica Si010513m.g I 0.858
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.858
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.855
Bra037732 Brassica rapa Bra037732 N 0.853
Bo4g194080 Brassica oleracea Bo4g194080 N 0.853
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.851
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.850
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.850
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.850
Bo4g191390 Brassica oleracea Bo4g191390 I 0.850
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.850
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.850
PK20089.1 Cannabis sativa PK20089.1 I 0.850
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.850
Bra018896 Brassica rapa Bra018896 I 0.850
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.850
Bra016886 Brassica rapa Bra016886 I 0.850
Bo6g024810 Brassica oleracea Bo6g024810 I 0.850
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.850
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.850
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.850
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.850
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.850
BHLH122 Arabidopsis thaliana AT1G51140 D 0.850
Ca_14223 Cicer arietinum Ca_14223 I 0.850
TCM_040564 Theobroma cacao TCM_040564 I 0.850
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.850
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.850
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.850
Ca_02662 Cicer arietinum Ca_02662 I 0.850
MDP0000214472 Malus domestica MDP0000214472 N 0.847
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.847
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.847
GLYMA03G29750 Glycine max GLYMA03G29750 N 0.846
Ca_26916 Cicer arietinum Ca_26916 I 0.846
Cla015469 Citrullus lanatus Cla015469 I 0.845
cassava36544.valid.m1 Manihot esculenta cassava36544.valid.m1 I 0.842
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.841
30149.m000231 Ricinus communis 30149.m000231 I 0.841
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.841
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I 0.840
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.838
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.838
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.838
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.838
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.838
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.838
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.838
Si029614m.g Setaria italica Si029614m.g I 0.838
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.838