CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30152.m002405
(
Ricinus communis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
30152.m002405
T047917_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.900
0.918
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.877
0.918
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.877
0.918
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.858
0.816
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.858
0.816
AT2G42280
M06733_2.00
Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH130_col_a
0.854
0.918
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30152.m002405
bHLH
359
407
HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTADMLDLAVEYIKDLQ
Links
Other
bHLH
family TFs
Other
Ricinus communis
TFs
234 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.914
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.914
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.914
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.914
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.914
Pm000447
Prunus mume
Pm000447
I
0.912
Cla017792
Citrullus lanatus
Cla017792
I
0.912
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.912
29216.m000261
Ricinus communis
29216.m000261
I
0.912
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.912
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.912
Pm025821
Prunus mume
Pm025821
I
0.912
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.912
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.912
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.912
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.912
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.912
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.912
TCM_024842
Theobroma cacao
TCM_024842
I
0.912
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.912
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.912
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.912
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.912
MDP0000180376
Malus domestica
MDP0000180376
I
0.912
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.912
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.912
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.912
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.912
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.912
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.912
PK18038.1
Cannabis sativa
PK18038.1
I
0.912
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.912
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.912
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.912
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.912
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.912
mgf016734m
Mimulus guttatus
mgf016734m
I
0.912
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.912
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.912
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.912
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.912
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.912
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.902
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.902
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.901
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.900
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.900
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.900
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.900
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.900
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.900
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.900
OS08G0506700
Oryza sativa
OS08G0506700
D
0.900
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.900
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.900
OS09G0487900
Oryza sativa
OS09G0487900
I
0.900
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.900
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.900
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.900
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.900
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.900
OB08G26810
Oryza brachyantha
OB08G26810
I
0.900
F775_24151
Aegilops tauschii
F775_24151
I
0.900
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.900
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.900
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.900
OBART08G19860
Oryza barthii
OBART08G19860
I
0.900
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.900
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.900
OBART09G14660
Oryza barthii
OBART09G14660
I
0.900
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.900
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.899
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.897
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.897
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.893
TCM_005925
Theobroma cacao
TCM_005925
I
0.893
Ciclev10031622m.g
Citrus clementina
Ciclev10031622m.g
I
0.888
orange1.1g016638m.g
Citrus sinensis
orange1.1g016638m.g
I
0.888
gene26967-v1.0-hybrid
Fragaria vesca
gene26967-v1.0-hybrid
I
0.888
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.884
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.884
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.884
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.884
Pavir.J08536
Panicum virgatum
Pavir.J08536
I
0.884
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.884
OB02G30670
Oryza brachyantha
OB02G30670
I
0.884
OBART02G23210
Oryza barthii
OBART02G23210
I
0.884
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.884
OMERI02G22740
Oryza meridionalis
OMERI02G22740
I
0.884
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.884
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.884
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.884
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.884
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.884
SapurV1A.0027s0090
Salix purpurea
SapurV1A.0027s0090
I
0.884
Si010513m.g
Setaria italica
Si010513m.g
I
0.884
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.884
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.884
GLYMA02G29830
Glycine max
GLYMA02G29830
I
0.882
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.878
Bostr.26675s0074
Boechera stricta
Bostr.26675s0074
I
0.877
Bo4g191390
Brassica oleracea
Bo4g191390
I
0.877
Cagra.2093s0006
Capsella grandiflora
Cagra.2093s0006
I
0.877
MTR_2g098310
Medicago truncatula
MTR_2g098310
I
0.877
orange1.1g015337m.g
Citrus sinensis
orange1.1g015337m.g
I
0.877
Ca_14223
Cicer arietinum
Ca_14223
I
0.877
GLYMA12G05930
Glycine max
GLYMA12G05930
I
0.877
GLYMA11G13960
Glycine max
GLYMA11G13960
I
0.877
Thhalv10011463m.g
Eutrema salsugineum
Thhalv10011463m.g
I
0.877
Carubv10009458m.g
Capsella rubella
Carubv10009458m.g
I
0.877
Ciclev10015437m.g
Citrus clementina
Ciclev10015437m.g
I
0.877
Bra016886
Brassica rapa
Bra016886
I
0.877
Eucgr.B03669
Eucalyptus grandis
Eucgr.B03669
I
0.877
Bra018896
Brassica rapa
Bra018896
I
0.877
GSMUA_Achr9G27780_001
Musa acuminata
GSMUA_Achr9G27780_001
I
0.877
Gorai.009G071900
Gossypium raimondii
Gorai.009G071900
I
0.877
Bo6g024810
Brassica oleracea
Bo6g024810
I
0.877
Ca_02662
Cicer arietinum
Ca_02662
I
0.877
fgenesh2_kg.1__4183__AT1G51140.1
Arabidopsis lyrata
fgenesh2_kg.1__4183__AT1G51140.1
I
0.877
GLYMA13G41670
Glycine max
GLYMA13G41670
I
0.877
PK20089.1
Cannabis sativa
PK20089.1
I
0.877
BHLH122
Arabidopsis thaliana
AT1G51140
D
0.877
TCM_040564
Theobroma cacao
TCM_040564
I
0.877
GLYMA15G03740
Glycine max
GLYMA15G03740
I
0.877
PRUPE_ppa006134mg
Prunus persica
PRUPE_ppa006134mg
I
0.875
Pm016406
Prunus mume
Pm016406
I
0.875
Pavir.Aa01423
Panicum virgatum
Pavir.Aa01423
I
0.873
GSMUA_Achr6G21220_001
Musa acuminata
GSMUA_Achr6G21220_001
I
0.873
Cla015469
Citrullus lanatus
Cla015469
I
0.872
Ca_26916
Cicer arietinum
Ca_26916
I
0.872
cassava36544.valid.m1
Manihot esculenta
cassava36544.valid.m1
I
0.869
30149.m000231
Ricinus communis
30149.m000231
I
0.867
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.867
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.866
Pavir.J00377
Panicum virgatum
Pavir.J00377
I
0.865
GRMZM2G417597
Zea mays
GRMZM2G417597
I
0.865
GRMZM2G085467
Zea mays
GRMZM2G085467
I
0.865
Pavir.J14004
Panicum virgatum
Pavir.J14004
I
0.865
Sb02g028300
Sorghum bicolor
Sb02g028300
I
0.865
GSMUA_Achr3G11110_001
Musa acuminata
GSMUA_Achr3G11110_001
I
0.865
Eucgr.J00796
Eucalyptus grandis
Eucgr.J00796
I
0.865
Si029614m.g
Setaria italica
Si029614m.g
I
0.865
Pavir.Ba01718
Panicum virgatum
Pavir.Ba01718
I
0.865
Cagra.3706s0004
Capsella grandiflora
Cagra.3706s0004
I
0.864
TCM_020066
Theobroma cacao
TCM_020066
I
0.864
chr5.LjT42F22.20.nc
Lotus japonicus
chr5.LjT42F22.20.nc
I
0.864
Gorai.011G144600
Gossypium raimondii
Gorai.011G144600
I
0.864
Bra000291
Brassica rapa
Bra000291
I
0.864
Bra004748
Brassica rapa
Bra004748
I
0.864
Solyc09g098110.2
Solanum lycopersicum
Solyc09g098110.2
I
0.864
AT2G43140
Arabidopsis thaliana
AT2G43140
I
0.864
Carubv10023683m.g
Capsella rubella
Carubv10023683m.g
I
0.864
GLYMA20G39220
Glycine max
GLYMA20G39220
I
0.864
Bostr.25993s0461
Boechera stricta
Bostr.25993s0461
I
0.864
PGSC0003DMG400006569
Solanum tuberosum
PGSC0003DMG400006569
I
0.864
mgf005043m
Mimulus guttatus
mgf005043m
I
0.864
Bo4g019620
Brassica oleracea
Bo4g019620
I
0.864
MDP0000273574
Malus domestica
MDP0000273574
I
0.864
fgenesh2_kg.4__2475__AT2G43140.1
Arabidopsis lyrata
fgenesh2_kg.4__2475__AT2G43140.1
I
0.864
Pm007619
Prunus mume
Pm007619
I
0.864
SapurV1A.0529s0060
Salix purpurea
SapurV1A.0529s0060
I
0.864
VIT_05s0124g00240
Vitis vinifera
VIT_05s0124g00240
I
0.864
PK07850.1
Cannabis sativa
PK07850.1
I
0.864
PRUPE_ppa025178mg
Prunus persica
PRUPE_ppa025178mg
I
0.864
Thhalv10016998m.g
Eutrema salsugineum
Thhalv10016998m.g
I
0.864
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.864
Bo3g036400
Brassica oleracea
Bo3g036400
I
0.864
evm.TU.contig_45766
Carica papaya
evm.TU.contig_45766
I
0.863
Cucsa.050160
Cucumis sativus
Cucsa.050160
I
0.860
GLYMA08G16190
Glycine max
GLYMA08G16190
I
0.860
POPTR_0001s27680
Populus trichocarpa
POPTR_0001s27680
I
0.860
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.858
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.858
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.858
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.858
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.858
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.858
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.858
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.858
MDP0000269890
Malus domestica
MDP0000269890
I
0.858
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.858
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.858
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.858
Pm004181
Prunus mume
Pm004181
I
0.858
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.858
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.858
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.858
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.858
PK06301.1
Cannabis sativa
PK06301.1
I
0.858
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.858
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.858
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.858
TCM_036484
Theobroma cacao
TCM_036484
I
0.858
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.858
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.858
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.858
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.858
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.858
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.858
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.858
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.858
mgf002701m
Mimulus guttatus
mgf002701m
I
0.858
Bra028088
Brassica rapa
Bra028088
I
0.858
Bra036760
Brassica rapa
Bra036760
I
0.858
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.858
Eucgr.G03396
Eucalyptus grandis
Eucgr.G03396
I
0.856
PDK_20s1302565g001
Phoenix dactylifera
PDK_20s1302565g001
I
0.855
Solyc12g100140.1
Solanum lycopersicum
Solyc12g100140.1
I
0.855
PGSC0003DMG400023852
Solanum tuberosum
PGSC0003DMG400023852
I
0.855
AT2G42280
Arabidopsis thaliana
AT2G42280
D
0.854
Carubv10023498m.g
Capsella rubella
Carubv10023498m.g
I
0.854
scaffold_403077.1
Arabidopsis lyrata
scaffold_403077.1
I
0.854
POPTR_0003s22290
Populus trichocarpa
POPTR_0003s22290
I
0.854
Cagra.2636s0012
Capsella grandiflora
Cagra.2636s0012
I
0.854
VIT_06s0004g01740
Vitis vinifera
VIT_06s0004g01740
I
0.854
Si017194m.g
Setaria italica
Si017194m.g
I
0.854
MDP0000307685
Malus domestica
MDP0000307685
I
0.854
30169.m006403
Ricinus communis
30169.m006403
I
0.854
SapurV1A.0009s0400
Salix purpurea
SapurV1A.0009s0400
I
0.854
chr1.CM0318.250.nd
Lotus japonicus
chr1.CM0318.250.nd
I
0.850
AMTR_s00070p00149100
Amborella trichopoda
AMTR_s00070p00149100
I
0.847
mgf018372m
Mimulus guttatus
mgf018372m
N
0.847
GLYMA15G42680
Glycine max
GLYMA15G42680
I
0.847
Solyc11g056650.1
Solanum lycopersicum
Solyc11g056650.1
I
0.846
PGSC0003DMG400022058
Solanum tuberosum
PGSC0003DMG400022058
I
0.846
PK14093.1
Cannabis sativa
PK14093.1
I
0.844
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.843
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.843
LPERR09G10800
Leersia perrieri
LPERR09G10800
I
0.842
LPERR08G16800
Leersia perrieri
LPERR08G16800
I
0.842
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.839
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.839
GLYMA12G36750
Glycine max
GLYMA12G36750
I
0.839
GLYMA13G27455
Glycine max
GLYMA13G27455
I
0.839