gw1.185.89.1 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gw1.185.89.1 T048662_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.869 0.804
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.869 0.804
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.868 0.804
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.845 0.804
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.845 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.185.89.1 bHLH 12 62

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.880
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.880
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.880
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.880
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.880
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.880
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.880
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.880
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.880
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.880
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.880
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.880
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.880
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.880
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.880
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.880
mgf016734m Mimulus guttatus mgf016734m I 0.880
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.880
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.880
Pm025821 Prunus mume Pm025821 I 0.880
29216.m000261 Ricinus communis 29216.m000261 I 0.880
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.880
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.880
PK18038.1 Cannabis sativa PK18038.1 I 0.880
Cla017792 Citrullus lanatus Cla017792 I 0.880
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.880
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.880
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.880
MDP0000180376 Malus domestica MDP0000180376 I 0.880
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.880
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.880
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.880
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.880
Pm000447 Prunus mume Pm000447 I 0.880
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.880
TCM_024842 Theobroma cacao TCM_024842 I 0.880
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.880
30152.m002405 Ricinus communis 30152.m002405 I 0.878
TCM_005925 Theobroma cacao TCM_005925 I 0.878
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.878
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.878
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.878
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.878
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.878
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.878
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I 0.877
TCM_036484 Theobroma cacao TCM_036484 I 0.869
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.869
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.869
Pm004181 Prunus mume Pm004181 I 0.869
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.869
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.869
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.869
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.869
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.869
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.869
Bo8g026850 Brassica oleracea Bo8g026850 I 0.869
Bra028088 Brassica rapa Bra028088 I 0.869
Bra036760 Brassica rapa Bra036760 I 0.869
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.869
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.869
Bo6g043840 Brassica oleracea Bo6g043840 I 0.869
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.869
BHLH81 Arabidopsis thaliana AT4G09180 I 0.869
BHLH80 Arabidopsis thaliana AT1G35460 D 0.869
PK06301.1 Cannabis sativa PK06301.1 I 0.869
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.869
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.869
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.869
MDP0000269890 Malus domestica MDP0000269890 I 0.869
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.869
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.869
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.869
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.869
mgf002701m Mimulus guttatus mgf002701m I 0.869
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.869
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.869
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.869
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.869
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.869
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.869
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.868
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.868
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.868
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.868
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.868
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.868
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.868
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.868
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.868
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.868
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.868
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.868
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.868
OB08G26810 Oryza brachyantha OB08G26810 I 0.868
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.868
F775_24151 Aegilops tauschii F775_24151 I 0.868
OBART08G19860 Oryza barthii OBART08G19860 I 0.868
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.868
OBART09G14660 Oryza barthii OBART09G14660 I 0.868
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.868
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.868
OS08G0506700 Oryza sativa OS08G0506700 D 0.868
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.868
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.868
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.868
OS09G0487900 Oryza sativa OS09G0487900 I 0.868
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.868
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.865
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.865
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.865
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.865
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.858
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.856
cassava36544.valid.m1 Manihot esculenta cassava36544.valid.m1 I 0.854
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.853
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.853
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.853
OBART02G23210 Oryza barthii OBART02G23210 I 0.853
Si010513m.g Setaria italica Si010513m.g I 0.853
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.853
OB02G30670 Oryza brachyantha OB02G30670 I 0.853
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.853
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.853
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.853
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.853
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.853
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.853
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.853
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.853
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.853
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.853
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.853
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.851
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.851
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.851
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.850
evm.TU.contig_45766 Carica papaya evm.TU.contig_45766 I 0.848
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.848
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.845
Bra018896 Brassica rapa Bra018896 I 0.845
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.845
PGSC0003DMG400023852 Solanum tuberosum PGSC0003DMG400023852 I 0.845
Bra016886 Brassica rapa Bra016886 I 0.845
Bo6g024810 Brassica oleracea Bo6g024810 I 0.845
Solyc12g100140.1 Solanum lycopersicum Solyc12g100140.1 I 0.845
TCM_040564 Theobroma cacao TCM_040564 I 0.845
Ca_02662 Cicer arietinum Ca_02662 I 0.845
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.845
Bo4g191390 Brassica oleracea Bo4g191390 I 0.845
Ca_14223 Cicer arietinum Ca_14223 I 0.845
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.845
PK20089.1 Cannabis sativa PK20089.1 I 0.845
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.845
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.845
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.845
BHLH122 Arabidopsis thaliana AT1G51140 D 0.845
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.845
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.845
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.845
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.845
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.845
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.845
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.845
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.845
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.845
MTR_4g033295 Medicago truncatula MTR_4g033295 I 0.843
Eucgr.G03396 Eucalyptus grandis Eucgr.G03396 I 0.841
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.841
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.841
PRUPE_ppa006134mg Prunus persica PRUPE_ppa006134mg I 0.838
Pm016406 Prunus mume Pm016406 I 0.838