SCL3 (Populus trichocarpa)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 POPTR_0009s05330 T201216_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05330.1 GRAS 46 467

Links

Other GRAS family TFs
Other Populus trichocarpa TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.929
30024.m001746 Ricinus communis 30024.m001746 N 0.860
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.860
TCM_040833 Theobroma cacao TCM_040833 N 0.858
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.849
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.844
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.827
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.822
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.822
Pm012190 Prunus mume Pm012190 N 0.819
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.816
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.816
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.805
Ca_27441 Cicer arietinum Ca_27441 N 0.805
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.795
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.792
Ca_11133 Cicer arietinum Ca_11133 N 0.790
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.786
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.781
Cla006433 Citrullus lanatus Cla006433 N 0.781
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.778
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.778
SCL3 Arabidopsis thaliana AT1G50420 N 0.778
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.778
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.775
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.775
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.773
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.773
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.770
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.770
Bra014251 Brassica rapa Bra014251 N 0.770
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.770
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.767
Bo3g179450 Brassica oleracea Bo3g179450 N 0.764
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.762
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.759
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.756
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.756
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.756
Bra018848 Brassica rapa Bra018848 N 0.753
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.751
30131.m007244 Ricinus communis 30131.m007244 N 0.751
TCM_042392 Theobroma cacao TCM_042392 N 0.751
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.748
Bo6g022200 Brassica oleracea Bo6g022200 N 0.748
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.748
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.748
Pm029840 Prunus mume Pm029840 N 0.748
Pm016466 Prunus mume Pm016466 N 0.748
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.747
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.742
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.740
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.737
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.734
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.732
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.732
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.729
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.729
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.729
mgf022906m Mimulus guttatus mgf022906m N 0.723
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.723
GLYMA01G43620 Glycine max GLYMA01G43620 N 0.721
mgf008315m Mimulus guttatus mgf008315m N 0.721
PK02707.1 Cannabis sativa PK02707.1 N 0.715
GLYMA11G01850 Glycine max GLYMA11G01850 N 0.712