Bra031884 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra031884 T253350_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.809 0.809
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.809 0.809
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.809 0.809
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.809 0.809
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.702 0.702
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.702 0.702
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.702 0.702
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.702 0.702
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.702 0.702
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.702 0.702
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.702 0.702
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.702 0.702
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra031884.1-P MADS box 10 56

Links

Other MADS box family TFs
Other Brassica rapa TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo01054s010 Brassica oleracea Bo01054s010 I 0.979
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.936
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.936
MAF5 Arabidopsis thaliana AT5G65080 I 0.915
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.896
MAF4 Arabidopsis thaliana AT5G65070 I 0.875
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.875
Bra024351 Brassica rapa Bra024351 I 0.872
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.872
Bo3g100570 Brassica oleracea Bo3g100570 I 0.851
Bra024350 Brassica rapa Bra024350 I 0.851
Bra031886 Brassica rapa Bra031886 I 0.851
Bo3g100540 Brassica oleracea Bo3g100540 I 0.830
FLC Arabidopsis thaliana AT5G10140 D 0.809
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.809
FLC Arabidopsis lyrata scaffold_601028.1 I 0.809
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.809
Bra006051 Brassica rapa Bra006051 I 0.809
Bra009055 Brassica rapa Bra009055 I 0.809
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.809
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.809
AGL27 Arabidopsis thaliana AT1G77080 D 0.809
AGL31 Arabidopsis thaliana AT5G65050 I 0.809
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.809
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.793
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.787
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.787
Bo3g005470 Brassica oleracea Bo3g005470 I 0.787
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.787
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.787
Bo9g173370 Brassica oleracea Bo9g173370 I 0.787
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.771
Bra028599 Brassica rapa Bra028599 I 0.771
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.766
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.766
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.766
Bo9g173400 Brassica oleracea Bo9g173400 I 0.766
Bra031888 Brassica rapa Bra031888 I 0.766
Bo13628s010 Brassica oleracea Bo13628s010 I 0.766
MAF3 Arabidopsis thaliana AT5G65060 I 0.766
Bra022771 Brassica rapa Bra022771 I 0.750
SapurV1A.0658s0010 Salix purpurea SapurV1A.0658s0010 I 0.750
Bo3g024250 Brassica oleracea Bo3g024250 I 0.745
Bo2g166500 Brassica oleracea Bo2g166500 I 0.745
Bo8g091790 Brassica oleracea Bo8g091790 I 0.745
Bra007324 Brassica rapa Bra007324 I 0.745
TCM_014661 Theobroma cacao TCM_014661 I 0.745
SapurV1A.1717s0010 Salix purpurea SapurV1A.1717s0010 I 0.729
SapurV1A.0173s0350 Salix purpurea SapurV1A.0173s0350 I 0.729
OGLUM03G34160 Oryza glumaepatula OGLUM03G34160 I 0.723
PGSC0003DMG400000136 Solanum tuberosum PGSC0003DMG400000136 I 0.723
PGSC0003DMG400001938 Solanum tuberosum PGSC0003DMG400001938 I 0.723
Solyc12g038510.1 Solanum lycopersicum Solyc12g038510.1 I 0.723
Bo6g072840 Brassica oleracea Bo6g072840 I 0.723
Solyc04g005320.2 Solanum lycopersicum Solyc04g005320.2 I 0.723
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.723
Solyc01g093960.2 Solanum lycopersicum Solyc01g093960.2 I 0.723
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.723
Bra003278 Brassica rapa Bra003278 I 0.723
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.723
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.723
LPERR03G28970 Leersia perrieri LPERR03G28970 I 0.723
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.708
SapurV1A.0173s0340 Salix purpurea SapurV1A.0173s0340 I 0.708
SapurV1A.2188s0030 Salix purpurea SapurV1A.2188s0030 I 0.708
gene04563-v1.0-hybrid Fragaria vesca gene04563-v1.0-hybrid I 0.708
SapurV1A.0833s0010 Salix purpurea SapurV1A.0833s0010 I 0.708
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
SapurV1A.5743s0010 Salix purpurea SapurV1A.5743s0010 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
Eucgr.E01330 Eucalyptus grandis Eucgr.E01330 I 0.708
SapurV1A.0881s0020 Salix purpurea SapurV1A.0881s0020 I 0.702
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.702
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.702
SapurV1A.0400s0280 Salix purpurea SapurV1A.0400s0280 I 0.702
SapurV1A.4216s0020 Salix purpurea SapurV1A.4216s0020 I 0.702
mgf007278m Mimulus guttatus mgf007278m I 0.702
30174.m008934 Ricinus communis 30174.m008934 I 0.702
Pm019409 Prunus mume Pm019409 I 0.702
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.702
mgf001713m Mimulus guttatus mgf001713m I 0.702
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.702
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.702
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.702
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.702
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.702
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.702
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.702
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.702
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.702
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.702
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.702
Lus10015766.g Linum usitatissimum Lus10015766.g I 0.702
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.702
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.702
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.702
MDP0000574222 Malus domestica MDP0000574222 I 0.702
Lus10037039.g Linum usitatissimum Lus10037039.g I 0.702
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.702
Pm007034 Prunus mume Pm007034 I 0.702
MADS6 Oryza sativa OS02G0682200 D 0.702
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.702
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.702
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.702
GSMUA_Achr11G07760_001 Musa acuminata GSMUA_Achr11G07760_001 I 0.702
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.702
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.702
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.702
OB04G29660 Oryza brachyantha OB04G29660 I 0.702
OBART02G28030 Oryza barthii OBART02G28030 I 0.702
OB02G35340 Oryza brachyantha OB02G35340 I 0.702
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.702
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.702
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.702
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.702
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.702
Bra025126 Brassica rapa Bra025126 I 0.702
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.702
AGL18 Arabidopsis thaliana AT3G57390 I 0.702
AGL6 Arabidopsis thaliana AT2G45650 D 0.702
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.702
F775_31247 Aegilops tauschii F775_31247 I 0.702
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.702
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.702
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.702
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.702
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.702
OBART04G22790 Oryza barthii OBART04G22790 I 0.702
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.702
Si002551m.g Setaria italica Si002551m.g I 0.702
Sb03g042080 Sorghum bicolor Sb03g042080 I 0.702
PRUPE_ppa010679mg Prunus persica PRUPE_ppa010679mg I 0.702
POPTR_0015s14010 Populus trichocarpa POPTR_0015s14010 I 0.702
Si018160m.g Setaria italica Si018160m.g I 0.702
TCM_005458 Theobroma cacao TCM_005458 I 0.702
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.702
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.702
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.702
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.702
OS04G0580700 Oryza sativa OS04G0580700 I 0.702
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.702
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.702
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.702
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.702
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.702
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.702
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.702
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.702
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.702
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.702
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.702
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.702
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700