Thhalv10004949m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10004949m.g T259113_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.830 0.830
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.830 0.830
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.830 0.830
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10004949m MADS box 10 56
Thhalv10005055m MADS box 10 56

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra031884 Brassica rapa Bra031884 I 0.936
MAF5 Arabidopsis thaliana AT5G65080 I 0.915
Bo01054s010 Brassica oleracea Bo01054s010 I 0.915
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.896
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.875
Bra024351 Brassica rapa Bra024351 I 0.872
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.854
MAF4 Arabidopsis thaliana AT5G65070 I 0.854
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.854
Bra024350 Brassica rapa Bra024350 I 0.830
Bra031886 Brassica rapa Bra031886 I 0.830
Bo3g100570 Brassica oleracea Bo3g100570 I 0.830
Bo3g100540 Brassica oleracea Bo3g100540 I 0.830
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.812
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.812
FLC Arabidopsis thaliana AT5G10140 D 0.812
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.812
Bra009055 Brassica rapa Bra009055 I 0.812
Bra006051 Brassica rapa Bra006051 I 0.812
FLC Arabidopsis lyrata scaffold_601028.1 I 0.812
Bo3g005470 Brassica oleracea Bo3g005470 I 0.809
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.792
Bo9g173370 Brassica oleracea Bo9g173370 I 0.792
Bra028599 Brassica rapa Bra028599 I 0.792
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.787
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.787
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.787
AGL31 Arabidopsis thaliana AT5G65050 I 0.787
Bo13628s010 Brassica oleracea Bo13628s010 I 0.787
Bo9g173400 Brassica oleracea Bo9g173400 I 0.787
AGL27 Arabidopsis thaliana AT1G77080 D 0.766
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.766
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.766
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.766
Bo3g024250 Brassica oleracea Bo3g024250 I 0.750
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.745
Bra031888 Brassica rapa Bra031888 I 0.745
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.745
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.745
MAF3 Arabidopsis thaliana AT5G65060 I 0.745
SapurV1A.0658s0010 Salix purpurea SapurV1A.0658s0010 I 0.729
Bra022771 Brassica rapa Bra022771 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Bo2g166500 Brassica oleracea Bo2g166500 I 0.723
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.721
SapurV1A.1717s0010 Salix purpurea SapurV1A.1717s0010 I 0.708
Lus10015766.g Linum usitatissimum Lus10015766.g I 0.708
Bra007324 Brassica rapa Bra007324 I 0.708
TCM_014661 Theobroma cacao TCM_014661 I 0.708
Bo8g091790 Brassica oleracea Bo8g091790 I 0.708
Lus10037039.g Linum usitatissimum Lus10037039.g I 0.708
SapurV1A.0173s0350 Salix purpurea SapurV1A.0173s0350 I 0.708
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.702