CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10012087m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10012087m.g
T290022_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.741
0.723
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.720
0.787
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.720
0.787
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10012087m
Myb
6
58
RNKWTAEEEGALLAGICKHGAGKWLNILEDPEFRPQLLYRSNIDLKDKWRNMK
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.809
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.782
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.782
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.782
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.782
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.781
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.781
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.781
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.781
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.781
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.779
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.779
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.779
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.775
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.769
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.754
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.748
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.748
29812.m000204
Ricinus communis
29812.m000204
I
0.748
Pm021139
Prunus mume
Pm021139
I
0.748
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.748
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.748
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.748
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.748
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.748
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.748
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.744
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.742
Ca_02722
Cicer arietinum
Ca_02722
I
0.742
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.741
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.741
Pm002374
Prunus mume
Pm002374
I
0.741
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.741
MDP0000239354
Malus domestica
MDP0000239354
I
0.741
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.741
PK06103.1
Cannabis sativa
PK06103.1
D
0.741
Cla014248
Citrullus lanatus
Cla014248
I
0.741
Ca_09355
Cicer arietinum
Ca_09355
I
0.741
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.741
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.741
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.741
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.741
BGIOSGA035841
Oryza indica
BGIOSGA035841
I
0.741
Ca_02232
Cicer arietinum
Ca_02232
I
0.741
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.741
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.741
OGLUM12G20330
Oryza glumaepatula
OGLUM12G20330
I
0.741
OLONG_008332
Oryza longistaminata
OLONG_008332
I
0.741
OBART12G18680
Oryza barthii
OBART12G18680
I
0.741
OB12G25520
Oryza brachyantha
OB12G25520
I
0.741
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.741
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.741
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.741
OMERI12G14000
Oryza meridionalis
OMERI12G14000
I
0.741
ORUFI12G20880
Oryza rufipogon
ORUFI12G20880
I
0.741
OS12G0613300
Oryza sativa
OS12G0613300
I
0.741
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.741
ONIVA12G17630
Oryza nivara
ONIVA12G17630
I
0.741
ORGLA12G0159400
Oryza glaberrima
ORGLA12G0159400
I
0.741
OPUNC12G16890
Oryza punctata
OPUNC12G16890
I
0.741
Ca_10058
Cicer arietinum
Ca_10058
I
0.737
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.737
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.737
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.737
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.737
Si002467m.g
Setaria italica
Si002467m.g
I
0.737
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.737
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.737
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.737
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.737
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.737
Bra030894
Brassica rapa
Bra030894
I
0.736
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.736
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.731
Thhalv10011866m.g
Eutrema salsugineum
Thhalv10011866m.g
I
0.727
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.721
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.721
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.720
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.720
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.714
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.714
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.714
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.714
Cla006547
Citrullus lanatus
Cla006547
I
0.714
VIT_07s0151g00480
Vitis vinifera
VIT_07s0151g00480
I
0.714
VIT_00s1311g00020
Vitis vinifera
VIT_00s1311g00020
I
0.714
TCM_007242
Theobroma cacao
TCM_007242
I
0.714
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.714
PK19870.1
Cannabis sativa
PK19870.1
I
0.714
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.711
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.707
MDP0000234807
Malus domestica
MDP0000234807
I
0.707
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.704
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.704
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.704
MTR_5g015340
Medicago truncatula
MTR_5g015340
I
0.701
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.698
GRMZM2G023667
Zea mays
GRMZM2G023667
I
0.698
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.698
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.698
gene05764-v1.0-hybrid
Fragaria vesca
gene05764-v1.0-hybrid
I
0.697
Aquca_060_00026
Aquilegia coerulea
Aquca_060_00026
I
0.694
29912.m005376
Ricinus communis
29912.m005376
I
0.689
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.689
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.689
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.689
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.687
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.686
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.686
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.686
Bra016037
Brassica rapa
Bra016037
I
0.680
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.680
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.677
Bostr.7128s0053
Boechera stricta
Bostr.7128s0053
I
0.669
EuGene.0500010080
Micromonas sp RCC299
EuGene.0500010080
I
0.664
Bra025967
Brassica rapa
Bra025967
I
0.664
Bra016598
Brassica rapa
Bra016598
I
0.664
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.664
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.664
Cagra.1262s0035
Capsella grandiflora
Cagra.1262s0035
I
0.663
Carubv10009763m.g
Capsella rubella
Carubv10009763m.g
I
0.663