Bra030894 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra030894 T268055_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.815 0.723
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.815 0.723
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.753 0.638
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.701 0.617
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030894.1-P Myb 6 58

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g184590 Brassica oleracea Bo3g184590 I 0.909
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.815
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.815
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.805
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.793
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.793
Bra016037 Brassica rapa Bra016037 I 0.786
Bo6g116150 Brassica oleracea Bo6g116150 I 0.786
Bo8g104830 Brassica oleracea Bo8g104830 I 0.781
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.781
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.781
Bra030992 Brassica rapa Bra030992 I 0.781
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.781
Bra016598 Brassica rapa Bra016598 I 0.771
Bo8g067280 Brassica oleracea Bo8g067280 I 0.771
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.768
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.768
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.765
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.765
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.765
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.756
TCM_029078 Theobroma cacao TCM_029078 I 0.754
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.754
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.754
29706.m001328 Ricinus communis 29706.m001328 I 0.754
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.754
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.753
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.753
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.753
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.753
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.753
OS01G0708000 Oryza sativa OS01G0708000 D 0.753
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.753
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.753
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.753
OBART01G28260 Oryza barthii OBART01G28260 I 0.753
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.753
OB01G37330 Oryza brachyantha OB01G37330 I 0.753
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.745
Pm013309 Prunus mume Pm013309 I 0.745
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.743
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.743
Bra025967 Brassica rapa Bra025967 I 0.741
Bo5g023860 Brassica oleracea Bo5g023860 I 0.741
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.737
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.736
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.727
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.720
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.720
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.713
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.705
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.705
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.705
29912.m005376 Ricinus communis 29912.m005376 I 0.705
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.705
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.705
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.703
Cla012798 Citrullus lanatus Cla012798 I 0.702
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.702
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.701
TRB1 Arabidopsis thaliana AT1G49950 D 0.701
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.701
Bo6g018740 Brassica oleracea Bo6g018740 I 0.701
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.701
Bra018818 Brassica rapa Bra018818 I 0.701
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.701
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.701
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.701
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.701
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.696
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.696
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.693
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.692
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.691
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.691
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.691
MDP0000265359 Malus domestica MDP0000265359 I 0.691
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.691
Pm027209 Prunus mume Pm027209 I 0.691
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.689
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.689
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.688
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.687
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.687
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.687
PK00568.1 Cannabis sativa PK00568.1 I 0.682
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.680
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.680
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.680
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.680
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.671
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.671
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.671
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.671
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.671
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.668
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.668
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.668
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.668
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.668
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.668
Thhalv10011866m.g Eutrema salsugineum Thhalv10011866m.g I 0.666
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.664
Si002467m.g Setaria italica Si002467m.g I 0.664
MTR_8g018410 Medicago truncatula MTR_8g018410 I 0.664
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.664
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.664
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.664
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.664
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.664
Bo5g077530 Brassica oleracea Bo5g077530 I 0.662
Bra039650 Brassica rapa Bra039650 I 0.662
mgf009594m Mimulus guttatus mgf009594m I 0.662
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.662
Bostr.7128s0053 Boechera stricta Bostr.7128s0053 I 0.661