CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo6g116150
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo6g116150
T267453_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.837
0.891
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.837
0.891
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.790
0.761
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.748
0.696
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo6g116150.1
Myb
5
56
KLKWTGDEEEALRAGIEKHGPGKWKNILRDPEFADQLSNRSNIDLKDKWRNL
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra016037
Brassica rapa
Bra016037
I
0.909
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.871
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.871
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.871
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.843
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.837
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.829
Bra016598
Brassica rapa
Bra016598
I
0.827
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.827
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.827
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.817
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.815
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.815
Bra030992
Brassica rapa
Bra030992
I
0.809
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.797
Bra025967
Brassica rapa
Bra025967
I
0.797
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.790
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.790
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.790
OB01G37330
Oryza brachyantha
OB01G37330
I
0.790
OBART01G28260
Oryza barthii
OBART01G28260
I
0.790
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.790
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.790
OS01G0708000
Oryza sativa
OS01G0708000
D
0.790
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.790
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.790
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.790
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.787
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.787
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.786
Bra030894
Brassica rapa
Bra030894
I
0.786
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.779
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.778
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.776
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.776
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.768
29706.m001328
Ricinus communis
29706.m001328
I
0.768
TCM_029078
Theobroma cacao
TCM_029078
I
0.768
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.759
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.758
Pm013309
Prunus mume
Pm013309
I
0.758
Carubv10009763m.g
Capsella rubella
Carubv10009763m.g
I
0.757
Cagra.1262s0035
Capsella grandiflora
Cagra.1262s0035
I
0.757
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.751
Cla012798
Citrullus lanatus
Cla012798
I
0.750
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.750
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.750
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.750
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.750
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.750
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.749
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.748
Bra018818
Brassica rapa
Bra018818
I
0.748
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.748
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.748
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.748
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.748
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.748
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.748
TRB1
Arabidopsis thaliana
AT1G49950
D
0.748
PK00568.1
Cannabis sativa
PK00568.1
I
0.747
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.739
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.737
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.735
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.735
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.729
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.729
29912.m005376
Ricinus communis
29912.m005376
I
0.727
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.727
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.727
evm.TU.supercontig_25.81
Carica papaya
evm.TU.supercontig_25.81
I
0.725
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.724
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.722
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.715
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.715
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.715
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.715
Bra039650
Brassica rapa
Bra039650
I
0.715
AMTR_s00007p00193000
Amborella trichopoda
AMTR_s00007p00193000
I
0.715
Bo5g077530
Brassica oleracea
Bo5g077530
I
0.715
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.714
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.714
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.714
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.714
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.713
mgf009594m
Mimulus guttatus
mgf009594m
I
0.709
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.709
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.708
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.708
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.707
Pm027209
Prunus mume
Pm027209
I
0.707
MDP0000265359
Malus domestica
MDP0000265359
I
0.707
MTR_8g018410
Medicago truncatula
MTR_8g018410
I
0.704
mgf007122m
Mimulus guttatus
mgf007122m
I
0.703
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.701
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.701
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.701
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.701
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.701
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.701
Si002467m.g
Setaria italica
Si002467m.g
I
0.701
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.700
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.700
SELMODRAFT_49297
Selaginella moellendorffii
SELMODRAFT_49297
I
0.700
SELMODRAFT_49296
Selaginella moellendorffii
SELMODRAFT_49296
I
0.700
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.695
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.695
Ca_10058
Cicer arietinum
Ca_10058
I
0.693
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.691
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.683
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.683
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.683
EuGene.1300010252
Ostreococcus RCC809
EuGene.1300010252
I
0.682
Thhalv10012087m.g
Eutrema salsugineum
Thhalv10012087m.g
I
0.680
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.679
Solyc01g106940.2
Solanum lycopersicum
Solyc01g106940.2
I
0.678
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.678
Thhalv10011866m.g
Eutrema salsugineum
Thhalv10011866m.g
I
0.677
BRADI2G42240
Brachypodium distachyon
BRADI2G42240
I
0.673
Pavir.J27218
Panicum virgatum
Pavir.J27218
I
0.673
Pavir.Ea02064
Panicum virgatum
Pavir.Ea02064
I
0.673
Si002403m.g
Setaria italica
Si002403m.g
I
0.673
Ca_02722
Cicer arietinum
Ca_02722
I
0.669
EuGene.0000030935
Micromonas pusilla
EuGene.0000030935
I
0.669
mgf010975m
Mimulus guttatus
mgf010975m
I
0.667
mgf000125m
Mimulus guttatus
mgf000125m
I
0.667
Bostr.7128s0053
Boechera stricta
Bostr.7128s0053
I
0.667
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.665
TRIUR3_08672
Triticum urartu
TRIUR3_08672
I
0.663
GRMZM2G136887
Zea mays
GRMZM2G136887
I
0.663
Sb03g026470
Sorghum bicolor
Sb03g026470
I
0.663
Traes_3AL_CF481F6AC
Triticum aestivum
Traes_3AL_CF481F6AC
I
0.663
GRMZM2G087817
Zea mays
GRMZM2G087817
I
0.663
TRAES3BF118300070CFD_g
Triticum aestivum
TRAES3BF118300070CFD_g
I
0.663