Carubv10002913m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10002913m.g T323410_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.980 0.907
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.980 0.907
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002913m SBP 152 226

Links

Other SBP family TFs
Other Capsella rubella TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.984
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.984
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.982
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.982
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.981
Bra002188 Brassica rapa Bra002188 I 0.981
Bo9g154530 Brassica oleracea Bo9g154530 I 0.981
SPL7 Arabidopsis thaliana AT5G18830 D 0.980
Cla022022 Citrullus lanatus Cla022022 I 0.979
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.979
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.978
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.977
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.977
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.977
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.977
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.976
Si021754m.g Setaria italica Si021754m.g I 0.975
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.975
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.974
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.974
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.974
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.973
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.973
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.973
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.973
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.972
OBART05G16150 Oryza barthii OBART05G16150 I 0.972
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.972
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.972
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.972
29726.m003959 Ricinus communis 29726.m003959 I 0.972
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.972
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.972
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.972
OB05G24080 Oryza brachyantha OB05G24080 I 0.972
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.972
SPL9 Oryza sativa OS05G0408200 I 0.972
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.972
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.971
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.970
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.969
TCM_021101 Theobroma cacao TCM_021101 I 0.969
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.968
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.966
Bo00629s160 Brassica oleracea Bo00629s160 I 0.965
Bra023695 Brassica rapa Bra023695 I 0.965
mgf004695m Mimulus guttatus mgf004695m I 0.965
PK29723.1 Cannabis sativa PK29723.1 I 0.963
F775_04392 Aegilops tauschii F775_04392 I 0.963
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.959
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.959
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.959
Ca_00550 Cicer arietinum Ca_00550 I 0.957
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.957
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.957
MDP0000271587 Malus domestica MDP0000271587 I 0.957
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.956
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.949
Pm008092 Prunus mume Pm008092 I 0.947
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.947
MDP0000195461 Malus domestica MDP0000195461 I 0.945
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.943
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.938
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.893
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.893