ENSAMXG00000014804 (Astyanax mexicanus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSAMXG00000014804 T032922_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.914 0.981
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.914 0.981
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.914 0.981
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.914 0.981
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.914 0.981
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.914 0.981
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.914 0.981
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.914 0.981
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.914 0.981
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.914 0.981
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.914 0.981
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.914 0.981
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.914 0.981
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.914 0.981
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.914 0.904
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.914 0.904
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.914 0.904
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.912 0.981
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.912 0.981
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.912 0.981
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.912 0.981
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.912 0.981
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.912 0.981
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.912 0.981
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.912 0.981
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.942
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.942
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.942
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.886 0.904
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.886 0.904
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.886 0.904
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.886 0.904
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.886 0.904
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.886 0.904
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.886 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000015233 bHLH 422 475

Links

Other bHLH family TFs
Other Astyanax mexicanus TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
SCL21 Arabidopsis thaliana AT2G04890 N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
Bo2g149670 Brassica oleracea Bo2g149670 N 0.000
Bo7g030310 Brassica oleracea Bo7g030310 N 0.000
Bo7g089080 Brassica oleracea Bo7g089080 N 0.000
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Bra015156 Brassica rapa Bra015156 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra026077 Brassica rapa Bra026077 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
Bra037509 Brassica rapa Bra037509 N 0.000
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.000
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.000
PK09018.1 Cannabis sativa PK09018.1 N 0.000
PK15082.1 Cannabis sativa PK15082.1 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000