TCF3 (Macaca mulatta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSMMUG00000009017 T035404_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.884 0.981
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.884 0.981
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.884 0.981
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.884 0.865
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.884 0.865
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.884 0.865
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.884 0.865
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.884 0.865
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.884 0.865
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.884 0.865
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.884 0.865
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.884 0.865
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.884 0.865
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.884 0.865
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.884 0.865
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.884 0.865
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.884 0.865
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.882 0.865
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.882 0.865
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.882 0.865
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.882 0.865
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.882 0.865
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.882 0.865
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.882 0.865
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.882 0.865
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.856 0.827
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.856 0.827
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.856 0.827
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.856 0.827
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.856 0.827
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.856 0.827
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.856 0.827
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.856 0.827
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.856 0.827
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.856 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000011812 bHLH 549 602
ENSMMUP00000011814 bHLH 545 598

Links

Other bHLH family TFs
Other Macaca mulatta TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30032.m000462 Ricinus communis 30032.m000462 N 0.000
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.000
ARF31 Arabidopsis thaliana AT2G36080 N 0.000
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.000
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.000
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.000
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.000
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.000
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.000
Bo01079s020 Brassica oleracea Bo01079s020 N 0.000
Bo3g003800 Brassica oleracea Bo3g003800 N 0.000
Bo3g064320 Brassica oleracea Bo3g064320 N 0.000
Bo4g035110 Brassica oleracea Bo4g035110 N 0.000
Bo5g136360 Brassica oleracea Bo5g136360 N 0.000
Bo9g176470 Brassica oleracea Bo9g176470 N 0.000
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.000
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.000
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.000
Bra001411 Brassica rapa Bra001411 N 0.000
Bra005301 Brassica rapa Bra005301 N 0.000
Bra005886 Brassica rapa Bra005886 N 0.000
Bra017262 Brassica rapa Bra017262 N 0.000
Bra034828 Brassica rapa Bra034828 N 0.000
Bra041023 Brassica rapa Bra041023 N 0.000
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.000
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.000
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.000
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.000
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.000
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.000
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.000
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.000
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.000
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.000
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.000
Ca_00826 Cicer arietinum Ca_00826 N 0.000
Ca_25633 Cicer arietinum Ca_25633 I 0.000
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.000
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.000
Cla014858 Citrullus lanatus Cla014858 N 0.000
Cla017937 Citrullus lanatus Cla017937 I 0.000
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.000
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.000
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.000
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.000
F775_02500 Aegilops tauschii F775_02500 N 0.000
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.000
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.000
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.000
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.000
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.000
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.000
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.000
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.000
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.000
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.000
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.000
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.000
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.000
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.000
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.000
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.000
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.000
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.000
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.000
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.000
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.000
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.000
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.000
MDP0000229742 Malus domestica MDP0000229742 N 0.000
mgf018965m Mimulus guttatus mgf018965m N 0.000
mgf019085m Mimulus guttatus mgf019085m N 0.000
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.000
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.000
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.000
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.000
OB10G24100 Oryza brachyantha OB10G24100 N 0.000
OB11G12920 Oryza brachyantha OB11G12920 N 0.000
OB12G13420 Oryza brachyantha OB12G13420 N 0.000
OBART04G22880 Oryza barthii OBART04G22880 I 0.000
OBART10G17010 Oryza barthii OBART10G17010 N 0.000
OBART11G03590 Oryza barthii OBART11G03590 N 0.000
OBART12G03490 Oryza barthii OBART12G03490 N 0.000
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.000
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.000
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.000
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.000
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.000
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.000
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.000
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.000
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.000
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.000
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.000
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.000
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.000
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.000
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.000
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.000
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.000
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.000
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.000
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.000
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.000
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.000
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.000
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.000
OS04G0581400 Oryza sativa OS04G0581400 I 0.000
OS10G0537100 Oryza sativa OS10G0537100 N 0.000
OS11G0156000 Oryza sativa OS11G0156000 N 0.000
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.000
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.000
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.000
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.000
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.000
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.000
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.000
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.000
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.000
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.000
PK04952.1 Cannabis sativa PK04952.1 I 0.000
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.000
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.000
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.000
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.000
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.000
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.000
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.000
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.000
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.000
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.000
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.000
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.000
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.000
Si010849m.g Setaria italica Si010849m.g N 0.000
Si011823m.g Setaria italica Si011823m.g N 0.000
Si020241m.g Setaria italica Si020241m.g N 0.000
Si027632m.g Setaria italica Si027632m.g N 0.000
Si036864m.g Setaria italica Si036864m.g N 0.000
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.000
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.000
TCM_022729 Theobroma cacao TCM_022729 N 0.000
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.000
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.000
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.000
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.000
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.000
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.000
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.000
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.000
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.000
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.000
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.000
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.000
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.000
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.000