Bra018638 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra018638 T081925_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018638.1-P C2H2 ZF 265 286
Bra018638.1-P C2H2 ZF 285 311

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006047 Ricinus communis 29908.m006047 N 0.782
30055.m001542 Ricinus communis 30055.m001542 N 0.775
30061.m000294 Ricinus communis 30061.m000294 N 0.769
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.793
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.793
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.793
WIP3 Arabidopsis thaliana AT1G08290 N 0.817
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.759
Bo5g008880 Brassica oleracea Bo5g008880 N 0.827
Bo5g081360 Brassica oleracea Bo5g081360 N 0.763
Bo8g112550 Brassica oleracea Bo8g112550 N 0.827
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.800
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.811
Bra031621 Brassica rapa Bra031621 N 0.827
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.759
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.800
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.817
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.817
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.800
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.775
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.769
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.760
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.769
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.782
Ca_07051 Cicer arietinum Ca_07051 N 0.775
Ca_16482 Cicer arietinum Ca_16482 N 0.775
Ca_27078 Cicer arietinum Ca_27078 N 0.782
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.769
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.782
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.775
Cla000184 Citrullus lanatus Cla000184 N 0.782
Cla015481 Citrullus lanatus Cla015481 N 0.769
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.769
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.775
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.782
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.775
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.792
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.759
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.775
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.817
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.800
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.769
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.769
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.775
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.775
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.775
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.769
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.782
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.769
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.775
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.782
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.769
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.775
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.769
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.769
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.775
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.769
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.782
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.759
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.759
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.769
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.779
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.762
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.769
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.782
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.759
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.759
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.799
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.799
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.779
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.782
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.779
MDP0000131949 Malus domestica MDP0000131949 N 0.775
MDP0000142494 Malus domestica MDP0000142494 N 0.761
MDP0000144266 Malus domestica MDP0000144266 N 0.763
MDP0000300013 Malus domestica MDP0000300013 N 0.775
MDP0000573922 Malus domestica MDP0000573922 N 0.780
mgf022319m Mimulus guttatus mgf022319m N 0.769
mgf022981m Mimulus guttatus mgf022981m N 0.806
OB08G26650 Oryza brachyantha OB08G26650 N 0.759
OBART08G19670 Oryza barthii OBART08G19670 N 0.759
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.759
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.759
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.759
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.759
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.759
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.759
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.759
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.759
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.782
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.764
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.775
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.759
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.759
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.759
OS08G0504000 Oryza sativa OS08G0504000 N 0.759
OS09G0485600 Oryza sativa OS09G0485600 N 0.759
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.759
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.759
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.779
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.793
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.782
PK05257.1 Cannabis sativa PK05257.1 N 0.769
Pm001374 Prunus mume Pm001374 N 0.775
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.765
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.769
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.792
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.775
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.769
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.775
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.775
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.775
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.775
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.759
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.759
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.759
Si013819m.g Setaria italica Si013819m.g N 0.759
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.779
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.782
TCM_005892 Theobroma cacao TCM_005892 N 0.769
TCM_034881 Theobroma cacao TCM_034881 N 0.782
TCM_041441 Theobroma cacao TCM_041441 N 0.775
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.817
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.775
TT1 Vitis vinifera VIT_18s0001g05860 N 0.782