POPTR_0016s12650 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0016s12650 T255875_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s12650.1 MADS box 29 75

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28348.m000077 Ricinus communis 28348.m000077 N 0.745
29838.m001672 Ricinus communis 29838.m001672 N 0.702
30099.m001672 Ricinus communis 30099.m001672 N 0.723
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.702
AGL61 Arabidopsis thaliana AT2G24840 N 0.702
Bo1g112460 Brassica oleracea Bo1g112460 N 0.702
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.723
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.723
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.702
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.723
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.702
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.723
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.702
cassava27922.m1 Manihot esculenta cassava27922.m1 N 0.809
cassava44772.m1 Manihot esculenta cassava44772.m1 N 0.830
Cla006571 Citrullus lanatus Cla006571 N 0.702
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.702
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.702
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.702
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.702
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.702
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.702
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.702
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.723
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.723
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.723
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.702
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.702
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.745
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.723
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.702
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.702
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.745
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.702
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.702
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.745
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.723
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.723
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.723
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.702
Lus10003481.g Linum usitatissimum Lus10003481.g N 0.766
Lus10003940.g Linum usitatissimum Lus10003940.g N 0.766
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.702
Lus10015726.g Linum usitatissimum Lus10015726.g N 0.766
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.702
Lus10037450.g Linum usitatissimum Lus10037450.g N 0.766
Pm021070 Prunus mume Pm021070 N 0.702
Pm021071 Prunus mume Pm021071 N 0.702
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.723
POPTR_0016s12640 Populus trichocarpa POPTR_0016s12640 N 0.957
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.702
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.702
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.745
SapurV1A.0175s0160 Salix purpurea SapurV1A.0175s0160 N 0.915
SapurV1A.0175s0180 Salix purpurea SapurV1A.0175s0180 N 0.936
SapurV1A.0175s0190 Salix purpurea SapurV1A.0175s0190 N 0.915
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.702
TCM_006323 Theobroma cacao TCM_006323 N 0.702
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.723
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.723
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.723
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.723
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.702
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.702
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.702