Bo3g013160 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo3g013160 T000768_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.744 0.939
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.690 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.690 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.690 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g013160.1 AP2 32 83

Links

Other AP2 family TFs
Other Brassica oleracea TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2G Arabidopsis thaliana AT5G18450 D 0.744
DREB2D Arabidopsis thaliana AT1G75490 D 0.690
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.692
Pm006274 Prunus mume Pm006274 I 0.680
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.690
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.736
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.690
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.736
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.690
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.744
mgf024545m Mimulus guttatus mgf024545m I 0.689
mgf017629m Mimulus guttatus mgf017629m I 0.700
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.680
Cucsa.130200 Cucumis sativus Cucsa.130200 I 0.695
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.687
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.692
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.717
30170.m014115 Ricinus communis 30170.m014115 I 0.692
29680.m001737 Ricinus communis 29680.m001737 I 0.713
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.677
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.684
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.690
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.744
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.692
MDP0000295902 Malus domestica MDP0000295902 I 0.678
MDP0000250924 Malus domestica MDP0000250924 I 0.684
MDP0000141335 Malus domestica MDP0000141335 I 0.678
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.704
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.693
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.678
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.691
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.684
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.717
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.686
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.688
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.731
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.678
Bra008200 Brassica rapa Bra008200 I 0.682
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.691
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.688
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.688
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.677
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.677
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.690
Bra023674 Brassica rapa Bra023674 I 0.724
Bra015840 Brassica rapa Bra015840 I 0.690
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.683
Bra006460 Brassica rapa Bra006460 I 0.806
Bra003752 Brassica rapa Bra003752 I 0.687
Bra002159 Brassica rapa Bra002159 I 0.744
Bo9g155940 Brassica oleracea Bo9g155940 I 0.744
Bo6g119660 Brassica oleracea Bo6g119660 I 0.690
Bo6g086320 Brassica oleracea Bo6g086320 I 0.687
Bo2g083920 Brassica oleracea Bo2g083920 I 0.682
Bo2g016490 Brassica oleracea Bo2g016490 I 0.724
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.711
Cla021113 Citrullus lanatus Cla021113 I 0.680
Cla012194 Citrullus lanatus Cla012194 I 0.682
Ca_10770 Cicer arietinum Ca_10770 I 0.677
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.691
TCM_026121 Theobroma cacao TCM_026121 I 0.695
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.713
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.744
Pm003634 Prunus mume Pm003634 I 0.707
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.684
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.690
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.713
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.678
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.677
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.683