Alligator_sinensis_CCG017455.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG017455.1 T015856_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.785 1.000
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.785 1.000
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.785 1.000
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.785 1.000
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.632 0.744
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.632 0.744
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.605 0.605
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017455.1 ARID/BRIGHT 487 573

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N
mgf012819m Mimulus guttatus mgf012819m N
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N
Carubv10016920m.g Capsella rubella Carubv10016920m.g N
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N
MDP0000135483 Malus domestica MDP0000135483 N
MDP0000315125 Malus domestica MDP0000315125 N
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N
PK05603.1 Cannabis sativa PK05603.1 N
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N
29794.m003368 Ricinus communis 29794.m003368 N
Pm005208 Prunus mume Pm005208 N
Pm005207 Prunus mume Pm005207 N
Ca_14896 Cicer arietinum Ca_14896 N
SIGC Vitis vinifera VIT_04s0008g00600 N
TCM_037242 Theobroma cacao TCM_037242 N
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N
MTR_1g007370 Medicago truncatula MTR_1g007370 N
GLYMA17G26620 Glycine max GLYMA17G26620 N
GLYMA14G22170 Glycine max GLYMA14G22170 N
Bra014857 Brassica rapa Bra014857 N
Bo4g120510 Brassica oleracea Bo4g120510 N
SIGC Arabidopsis thaliana AT3G53920 N
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N