CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29949.m000124
(
Ricinus communis
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
29949.m000124
T202025_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29949.m000124
GRAS
177
513
LKHVLIACAKAVSDNDLLMAQWLMDELRQIVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKSLRCKEPASADLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENKVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDSTSAYARGGGPNIVGKRLAKLAESVKVPFEFHAAAMPNSEVHIKNLGVEPGEALAVNFAFMLHHLPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLSREHKERINVEQHCLARDVVNIIACEGTERVERHELLGKWRSRFRMAGFTPYPLSSLRFGGILC
Links
Other
GRAS
family TFs
Other
Ricinus communis
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1158s0007
Capsella grandiflora
Cagra.1158s0007
N
0.731
evm.TU.supercontig_12.194
Carica papaya
evm.TU.supercontig_12.194
N
0.746
Eucgr.F03523
Eucalyptus grandis
Eucgr.F03523
N
0.743
Eucgr.A01051
Eucalyptus grandis
Eucgr.A01051
N
0.836
Ciclev10014845m.g
Citrus clementina
Ciclev10014845m.g
N
0.764
Ciclev10007927m.g
Citrus clementina
Ciclev10007927m.g
N
0.761
Carubv10026289m.g
Capsella rubella
Carubv10026289m.g
N
0.824
Carubv10015685m.g
Capsella rubella
Carubv10015685m.g
N
0.734
Carubv10008830m.g
Capsella rubella
Carubv10008830m.g
N
0.716
Cagra.7055s0004
Capsella grandiflora
Cagra.7055s0004
N
0.716
Cagra.2766s0005
Capsella grandiflora
Cagra.2766s0005
N
0.824
evm.TU.supercontig_136.17
Carica papaya
evm.TU.supercontig_136.17
N
0.869
Bostr.5224s0004
Boechera stricta
Bostr.5224s0004
N
0.812
Bostr.26675s0117
Boechera stricta
Bostr.26675s0117
N
0.716
Aquca_028_00248
Aquilegia coerulea
Aquca_028_00248
N
0.770
Aquca_005_00234
Aquilegia coerulea
Aquca_005_00234
N
0.806
mgf013039m
Mimulus guttatus
mgf013039m
N
0.731
Cucsa.120390
Cucumis sativus
Cucsa.120390
N
0.821
Cucsa.042310
Cucumis sativus
Cucsa.042310
N
0.707
cassava8885.m1
Manihot esculenta
cassava8885.m1
N
0.890
cassava34699.m1
Manihot esculenta
cassava34699.m1
N
0.803
cassava34106.m1
Manihot esculenta
cassava34106.m1
N
0.893
MDP0000205236
Malus domestica
MDP0000205236
N
0.758
PDK_20s1411471g003
Phoenix dactylifera
PDK_20s1411471g003
N
0.758
PK09018.1
Cannabis sativa
PK09018.1
N
0.821
Thhalv10011379m.g
Eutrema salsugineum
Thhalv10011379m.g
N
0.710
Thhalv10004053m.g
Eutrema salsugineum
Thhalv10004053m.g
N
0.785
Thhalv10002541m.g
Eutrema salsugineum
Thhalv10002541m.g
N
0.737
SapurV1A.0054s0160
Salix purpurea
SapurV1A.0054s0160
N
0.884
SapurV1A.0030s0420
Salix purpurea
SapurV1A.0030s0420
N
0.726
orange1.1g009376m.g
Citrus sinensis
orange1.1g009376m.g
N
0.845
MDP0000804652
Malus domestica
MDP0000804652
N
0.860
MDP0000284679
Malus domestica
MDP0000284679
N
0.758
cassava10826.m1
Manihot esculenta
cassava10826.m1
N
0.818
MDP0000152670
Malus domestica
MDP0000152670
N
0.860
Lus10016596.g
Linum usitatissimum
Lus10016596.g
N
0.758
Lus10012323.g
Linum usitatissimum
Lus10012323.g
N
0.812
Lus10006369.g
Linum usitatissimum
Lus10006369.g
N
0.824
Gorai.009G446100
Gossypium raimondii
Gorai.009G446100
N
0.770
Gorai.007G167000
Gossypium raimondii
Gorai.007G167000
N
0.875
Gorai.001G192800
Gossypium raimondii
Gorai.001G192800
N
0.797
gene21592-v1.0-hybrid
Fragaria vesca
gene21592-v1.0-hybrid
N
0.875
gene03551-v1.0-hybrid
Fragaria vesca
gene03551-v1.0-hybrid
N
0.767
Bra036185
Brassica rapa
Bra036185
N
0.794
OMERI10G05450
Oryza meridionalis
OMERI10G05450
N
0.701
MTR_5g097480
Medicago truncatula
MTR_5g097480
N
0.860
MTR_5g094450
Medicago truncatula
MTR_5g094450
N
0.710
MTR_3g056110
Medicago truncatula
MTR_3g056110
N
0.710
GLYMA14G01960
Glycine max
GLYMA14G01960
N
0.719
GLYMA14G01020
Glycine max
GLYMA14G01020
N
0.878
GLYMA02G47640
Glycine max
GLYMA02G47640
N
0.881
GLYMA02G46730
Glycine max
GLYMA02G46730
N
0.722
SCL5
Arabidopsis lyrata
fgenesh2_kg.1__4145__AT1G50600.1
N
0.725
Bra037509
Brassica rapa
Bra037509
N
0.788
PGSC0003DMG400006132
Solanum tuberosum
PGSC0003DMG400006132
N
0.756
Bra020715
Brassica rapa
Bra020715
N
0.815
Bra018860
Brassica rapa
Bra018860
N
0.722
Bo9g009260
Brassica oleracea
Bo9g009260
N
0.794
Bo7g089080
Brassica oleracea
Bo7g089080
N
0.782
Bo7g030310
Brassica oleracea
Bo7g030310
N
0.728
Bo6g022330
Brassica oleracea
Bo6g022330
N
0.722
Bo2g149670
Brassica oleracea
Bo2g149670
N
0.812
PAT1
Arabidopsis thaliana
AT5G48150
N
0.821
SCL21
Arabidopsis thaliana
AT2G04890
N
0.740
SCL5
Arabidopsis thaliana
AT1G50600
N
0.725
TCM_002319
Theobroma cacao
TCM_002319
N
0.878
27613.m000642
Ricinus communis
27613.m000642
N
0.806
Pm015021
Prunus mume
Pm015021
N
0.875
Pm012019
Prunus mume
Pm012019
N
0.785
Cla001429
Citrullus lanatus
Cla001429
N
0.743
Ca_13855
Cicer arietinum
Ca_13855
N
0.716
Ca_09786
Cicer arietinum
Ca_09786
N
0.854
SCL5
Vitis vinifera
VIT_19s0090g01740
N
0.791
VIT_12s0057g00560
Vitis vinifera
VIT_12s0057g00560
N
0.893
SCL13
Vitis vinifera
VIT_00s0463g00020
N
0.728
TCM_030733
Theobroma cacao
TCM_030733
N
0.800
AMTR_s00088p00161000
Amborella trichopoda
AMTR_s00088p00161000
N
0.737
Solyc07g065270.1
Solanum lycopersicum
Solyc07g065270.1
N
0.755
Solyc07g047950.1
Solanum lycopersicum
Solyc07g047950.1
N
0.827
PAT1
Arabidopsis lyrata
scaffold_801100.1
N
0.806
SCL21
Arabidopsis lyrata
scaffold_303269.1
N
0.740
PRUPE_ppa004136mg
Prunus persica
PRUPE_ppa004136mg
N
0.758
PRUPE_ppa003702mg
Prunus persica
PRUPE_ppa003702mg
N
0.875
POPTR_0014s16230
Populus trichocarpa
POPTR_0014s16230
N
0.802
SCL5
Populus trichocarpa
POPTR_0001s37270
N
0.794
PGSC0003DMG400022187
Solanum tuberosum
PGSC0003DMG400022187
N
0.755