30170.m014099 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 30170.m014099 T227015_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.818 0.688
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.583
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.438
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30170.m014099 Homeodomain 380 430

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD4 Arabidopsis thaliana AT1G31320 D
AC214648.3_FG005 Zea mays AC214648.3_FG005 I
BGIOSGA013249 Oryza indica BGIOSGA013249 I
BGIOSGA018905 Oryza indica BGIOSGA018905 I
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I
F775_08326 Aegilops tauschii F775_08326 I
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I
GLYMA08G17990 Glycine max GLYMA08G17990 I
GLYMA10G35760 Glycine max GLYMA10G35760 I
GLYMA12G07650 Glycine max GLYMA12G07650 I
GLYMA13G40370 Glycine max GLYMA13G40370 I
GLYMA15G05030 Glycine max GLYMA15G05030 I
GLYMA20G31780 Glycine max GLYMA20G31780 I
GRMZM2G079185 Zea mays GRMZM2G079185 I
GRMZM2G447176 Zea mays GRMZM2G447176 I
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I
MLOC_5148 Hordeum vulgare MLOC_5148 I
MTR_1g095850 Medicago truncatula MTR_1g095850 I
MTR_2g068760 Medicago truncatula MTR_2g068760 I
MTR_2g093310 Medicago truncatula MTR_2g093310 I
MTR_4g060950 Medicago truncatula MTR_4g060950 I
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I
OMERI03G24920 Oryza meridionalis OMERI03G24920 I
ONIVA03G29300 Oryza nivara ONIVA03G29300 I
ONIVA05G01850 Oryza nivara ONIVA05G01850 I
OPUNC03G25820 Oryza punctata OPUNC03G25820 I
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I
OS05G0123000 Oryza sativa OS05G0123000 I
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I
Sb01g012810 Sorghum bicolor Sb01g012810 I
Sb09g002190 Sorghum bicolor Sb09g002190 I
Si037583m.g Setaria italica Si037583m.g I
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I
TCM_032557 Theobroma cacao TCM_032557 I
TCM_041094 Theobroma cacao TCM_041094 I
TCM_043081 Theobroma cacao TCM_043081 I
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I
TRIUR3_11082 Triticum urartu TRIUR3_11082 I
LBD4 Vitis vinifera VIT_00s0125g00290 I
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I
LBD3 Vitis vinifera VIT_19s0027g01120 I
Ca_04287 Cicer arietinum Ca_04287 I
Ca_06548 Cicer arietinum Ca_06548 I
Ca_13575 Cicer arietinum Ca_13575 I
Ca_14605 Cicer arietinum Ca_14605 I
Cla000556 Citrullus lanatus Cla000556 I
Cla005598 Citrullus lanatus Cla005598 I
Cla013678 Citrullus lanatus Cla013678 I
Cla020379 Citrullus lanatus Cla020379 I
Pm000938 Prunus mume Pm000938 I
Pm011040 Prunus mume Pm011040 I
Pm018585 Prunus mume Pm018585 I
30111.m000703 Ricinus communis 30111.m000703 I
30169.m006340 Ricinus communis 30169.m006340 I
cassava11218.m1 Manihot esculenta cassava11218.m1 I
cassava20471.m1 Manihot esculenta cassava20471.m1 I
cassava27818.m1 Manihot esculenta cassava27818.m1 I
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I
cassava40961.m1 Manihot esculenta cassava40961.m1 I
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I
Cucsa.052720 Cucumis sativus Cucsa.052720 I
Cucsa.118370 Cucumis sativus Cucsa.118370 I
Cucsa.239660 Cucumis sativus Cucsa.239660 I
mgf018189m Mimulus guttatus mgf018189m I
mgf026046m Mimulus guttatus mgf026046m I
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I
Carubv10010462m.g Capsella rubella Carubv10010462m.g I
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I
Lus10011645.g Linum usitatissimum Lus10011645.g I
Lus10031191.g Linum usitatissimum Lus10031191.g I
Lus10031769.g Linum usitatissimum Lus10031769.g I
Lus10036130.g Linum usitatissimum Lus10036130.g I
Lus10040373.g Linum usitatissimum Lus10040373.g I
MDP0000121203 Malus domestica MDP0000121203 I
MDP0000123013 Malus domestica MDP0000123013 I
MDP0000151784 Malus domestica MDP0000151784 I
MDP0000218986 Malus domestica MDP0000218986 I
MDP0000268890 Malus domestica MDP0000268890 I
MDP0000284409 Malus domestica MDP0000284409 I
MDP0000318244 Malus domestica MDP0000318244 I
MDP0000319331 Malus domestica MDP0000319331 I
MDP0000822986 Malus domestica MDP0000822986 I
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I
Pavir.J04684 Panicum virgatum Pavir.J04684 I
Pavir.J06256 Panicum virgatum Pavir.J06256 I
Pavir.J13923 Panicum virgatum Pavir.J13923 I
Pavir.J18260 Panicum virgatum Pavir.J18260 I
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I
PK11564.1 Cannabis sativa PK11564.1 I
PK23777.1 Cannabis sativa PK23777.1 I
PK27389.1 Cannabis sativa PK27389.1 I
CM1887.100.nc Lotus japonicus CM1887.100.nc I
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N
LBD11 Arabidopsis thaliana AT2G28500 N
BGIOSGA010952 Oryza indica BGIOSGA010952 N
BGIOSGA038947 Oryza indica BGIOSGA038947 N
Bo01039s010 Brassica oleracea Bo01039s010 N
Bo3g040220 Brassica oleracea Bo3g040220 N
Bo4g165420 Brassica oleracea Bo4g165420 N
Bo5g008590 Brassica oleracea Bo5g008590 N
Bo8g112780 Brassica oleracea Bo8g112780 N
Bra000491 Brassica rapa Bra000491 N
Bra011942 Brassica rapa Bra011942 N
Bra018675 Brassica rapa Bra018675 N
Bra031599 Brassica rapa Bra031599 N
Bra035698 Brassica rapa Bra035698 N
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N
F775_02335 Aegilops tauschii F775_02335 N
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N
GLYMA11G15810 Glycine max GLYMA11G15810 N
GRMZM2G021095 Zea mays GRMZM2G021095 N
GRMZM2G145568 Zea mays GRMZM2G145568 N
GRMZM2G165805 Zea mays GRMZM2G165805 N
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N
LPERR03G11720 Leersia perrieri LPERR03G11720 N
LPERR05G01520 Leersia perrieri LPERR05G01520 N
MLOC_68570 Hordeum vulgare MLOC_68570 N
OB03G23270 Oryza brachyantha OB03G23270 N
OBART03G13260 Oryza barthii OBART03G13260 N
OBART05G01640 Oryza barthii OBART05G01640 N
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N
OGLUM05G01700 Oryza glumaepatula OGLUM05G01700 N
OLONG_014851 Oryza longistaminata OLONG_014851 N
OMERI03G12370 Oryza meridionalis OMERI03G12370 N
OMERI05G01730 Oryza meridionalis OMERI05G01730 N
ONIVA03G14510 Oryza nivara ONIVA03G14510 N
OPUNC03G12790 Oryza punctata OPUNC03G12790 N
OPUNC05G01600 Oryza punctata OPUNC05G01600 N
OPUNC05G01610 Oryza punctata OPUNC05G01610 N
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N
OS03G0287400 Oryza sativa OS03G0287400 N
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N
Sb01g038650 Sorghum bicolor Sb01g038650 N
Si024430m.g Setaria italica Si024430m.g N
Si037280m.g Setaria italica Si037280m.g N
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N
Ca_02507 Cicer arietinum Ca_02507 N
Cla005133 Citrullus lanatus Cla005133 N
Cla005134 Citrullus lanatus Cla005134 N
cassava16668.m1 Manihot esculenta cassava16668.m1 N
cassava44959.m1 Manihot esculenta cassava44959.m1 N
Cucsa.166030 Cucumis sativus Cucsa.166030 N
Cucsa.207390 Cucumis sativus Cucsa.207390 N
Cucsa.207400 Cucumis sativus Cucsa.207400 N
Cucsa.275710 Cucumis sativus Cucsa.275710 N
mgf015666m Mimulus guttatus mgf015666m N
mgf019622m Mimulus guttatus mgf019622m N
mgf022524m Mimulus guttatus mgf022524m N
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N
Carubv10010390m.g Capsella rubella Carubv10010390m.g N
Carubv10023989m.g Capsella rubella Carubv10023989m.g N
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N
MDP0000879799 Malus domestica MDP0000879799 N
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N