GSMUA_Achr9G04510_001 (Musa acuminata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 GSMUA_Achr9G04510_001 T249175_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.813 0.642
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.813 0.642
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr9P04510_001 MADF 34 108

Links

Other MADF family TFs
Other Musa acuminata TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.000
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.834
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.000
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.863
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.000
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.000
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.896
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.881
mgf006505m Mimulus guttatus mgf006505m I 0.890
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.836
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.927
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.836
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.842
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.842
29900.m001628 Ricinus communis 29900.m001628 I 0.842
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.874
Cla019967 Citrullus lanatus Cla019967 I 0.000
MDP0000301451 Malus domestica MDP0000301451 I 0.000
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.855
PK27986.1 Cannabis sativa PK27986.1 I 0.000
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.896
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.951
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.944
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.834
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.944
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.000
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.836
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.836
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.000
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.842
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.000
29814.m000741 Ricinus communis 29814.m000741 I 0.952
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.844
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.825
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.000
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.866
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.883
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.830
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.874
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.837
Cla002288 Citrullus lanatus Cla002288 I 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.838
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.000
Bra034866 Brassica rapa Bra034866 I 0.870
Bra034165 Brassica rapa Bra034165 I 0.889
Bra003346 Brassica rapa Bra003346 I 0.000
Bo6g075950 Brassica oleracea Bo6g075950 I 0.000
Bo5g136850 Brassica oleracea Bo5g136850 I 0.896
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.896
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.920
Cla015773 Citrullus lanatus Cla015773 I 0.836
Ca_19877 Cicer arietinum Ca_19877 I 0.830
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.836
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.913
TCM_029209 Theobroma cacao TCM_029209 I 0.823
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.920
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.000
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.838
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.896
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.862
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.951
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.000
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.838
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.000
mgf001239m Mimulus guttatus mgf001239m N 0.861
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.000
MDP0000097759 Malus domestica MDP0000097759 N 0.924
MDP0000943251 Malus domestica MDP0000943251 N 0.906
Solyc07g055100.2 Solanum lycopersicum Solyc07g055100.2 N 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.918
TCM_042467 Theobroma cacao TCM_042467 N 0.907
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.842
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.884