evm.TU.contig_28089 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_28089 T258049_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_28089.1 MADS box 10 53

Links

Other MADS box family TFs
Other Carica papaya TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.733
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.814
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.800
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.795
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.783
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 1.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.711
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.810
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.783
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.729
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
MDP0000925348 Malus domestica MDP0000925348 I 0.756
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.702
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.711
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.744
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.733
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
TCM_026842 Theobroma cacao TCM_026842 I 0.727
Ca_06495 Cicer arietinum Ca_06495 I 0.795
Ca_13275 Cicer arietinum Ca_13275 I 0.711
Pm004396 Prunus mume Pm004396 I 0.733
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.745
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.733
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.745
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.841
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.727
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.818
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.909
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.723
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.822
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.977
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.705
evm.TU.contig_28448.2 Carica papaya evm.TU.contig_28448.2 N 0.720
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N 0.720
evm.TU.supercontig_4.187 Carica papaya evm.TU.supercontig_4.187 N 0.731
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.731
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.733
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.702
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.822
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.723
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.702
evm.TU.supercontig_100.9 Carica papaya evm.TU.supercontig_100.9 N 0.705
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N 0.720
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.702