POPTR_0010s12420 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0010s12420 T278387_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.810 0.839
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.788 0.817
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.788 0.817
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.694 0.731
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.694 0.731
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.694 0.731
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.693 0.731
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.672 0.688
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.672 0.688
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.672 0.688
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.667 0.720
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.661 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s12420.1 Myb 13 60
POPTR_0010s12420.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

890 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I
AAEL011425 Aedes aegypti AAEL011425 I
CapteG172235 Capitella teleta CapteG172235 I
CBN25379 Caenorhabditis brenneri CBN25379 I
CPIJ020011 Culex quinquefasciatus CPIJ020011 I
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I
TriadG64155 Trichoplax adhaerens TriadG64155 I
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I
PPAI002522 Phlebotomus papatasi PPAI002522 I
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I
HCOI01912600 Haemonchus contortus HCOI01912600 I
HCOI01913300 Haemonchus contortus HCOI01913300 I
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I
AMAG_00757 Allomyces macrogynus AMAG_00757 N
AMAG_02260 Allomyces macrogynus AMAG_02260 N
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N
WUBG_02390 Wuchereria bancrofti WUBG_02390 N
ACEP16621 Atta cephalotes ACEP16621 N
BGIBMGA005288 Bombyx mori BGIBMGA005288 N
Bm6643 Brugia malayi Bm6643 N
Bm8632 Brugia malayi Bm8632 N
CBG04066 Caenorhabditis briggsae CBG04066 N
CBG09136 Caenorhabditis briggsae CBG09136 N
CBG20663 Caenorhabditis briggsae CBG20663 N
CBN04053 Caenorhabditis brenneri CBN04053 N
CJA04355 Caenorhabditis japonica CJA04355 N
CJA19030 Caenorhabditis japonica CJA19030 N
CPIJ002953 Culex quinquefasciatus CPIJ002953 N
CRE03995 Caenorhabditis remanei CRE03995 N
CRE11852 Caenorhabditis remanei CRE11852 N
Ssrp Drosophila melanogaster FBgn0010278 N
Ssrp Drosophila pseudoobscura FBgn0078456 N
GF12460 Drosophila ananassae FBgn0089497 N
GG19998 Drosophila erecta FBgn0112197 N
GH21151 Drosophila grimshawi FBgn0128613 N
GI18750 Drosophila mojavensis FBgn0141489 N
GL11071 Drosophila persimilis FBgn0148681 N
GD25013 Drosophila simulans FBgn0196325 N
GJ21774 Drosophila virilis FBgn0208892 N
GK22092 Drosophila willistoni FBgn0224077 N
GE11532 Drosophila yakuba FBgn0229332 N
GB47837 Apis mellifera GB47837 N
HMEL015307 Heliconius melpomene HMEL015307 N
KGM_13851 Danaus plexippus KGM_13851 N
LOAG_08062 Loa loa LOAG_08062 N
LOAG_14354 Loa loa LOAG_14354 N
PPA02261 Pristionchus pacificus PPA02261 N
PPA06513 Pristionchus pacificus PPA06513 N
PPA14042 Pristionchus pacificus PPA14042 N
SINV22588 Solenopsis invicta SINV22588 N
SMAR015352 Strigamia maritima SMAR015352 N
tetur02g08250 Tetranychus urticae tetur02g08250 N
hmg-1.1 Caenorhabditis elegans WBGene00001971 N
hmg-4 Caenorhabditis elegans WBGene00001974 N
WBGene00237022 Onchocerca volvulus WBGene00237022 N
WBGene00238628 Onchocerca volvulus WBGene00238628 N
YQE_02071 Dendroctonus ponderosae YQE_02071 N
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N
LDEC020995 Leptinotarsa decemlineata LDEC020995 N
Minc01744 Meloidogyne incognita Minc01744 N
Minc03634 Meloidogyne incognita Minc03634 N
Minc04648 Meloidogyne incognita Minc04648 N
Minc10016 Meloidogyne incognita Minc10016 N
MDOA007633 Musca domestica MDOA007633 N
PPAI002521 Phlebotomus papatasi PPAI002521 N
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N
ASU_05752 Ascaris suum ASU_05752 N
ASU_05994 Ascaris suum ASU_05994 N
ASU_07820 Ascaris suum ASU_07820 N
ASU_09087 Ascaris suum ASU_09087 N
BTMF_0000229601 Brugia timori BTMF_0000229601 N
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N
DME_0000590001 Dracunculus medinensis DME_0000590001 N
DME_0000779601 Dracunculus medinensis DME_0000779601 N
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N
HCOI00417600 Haemonchus contortus HCOI00417600 N
HCOI01420700 Haemonchus contortus HCOI01420700 N
HCOI01550200 Haemonchus contortus HCOI01550200 N
HCOI02106600 Haemonchus contortus HCOI02106600 N
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N
HmN_000028000 Hymenolepis microstoma HmN_000028000 N
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N
L596_g16476 Steinernema carpocapsae L596_g16476 N
L596_g28088 Steinernema carpocapsae L596_g28088 N
L596_g8199 Steinernema carpocapsae L596_g8199 N
L889_g16198 Steinernema feltiae L889_g16198 N
L889_g27280 Steinernema feltiae L889_g27280 N
L889_g29516 Steinernema feltiae L889_g29516 N
L889_g30211 Steinernema feltiae L889_g30211 N
L889_g6592 Steinernema feltiae L889_g6592 N
L889_g9094 Steinernema feltiae L889_g9094 N
L892_g19058 Steinernema scapterisci L892_g19058 N
L892_g23618 Steinernema scapterisci L892_g23618 N
L892_g2503 Steinernema scapterisci L892_g2503 N
L893_g23503 Steinernema glaseri L893_g23503 N
L893_g29974 Steinernema glaseri L893_g29974 N
L898_g23313 Steinernema monticolum L898_g23313 N
L898_g4830 Steinernema monticolum L898_g4830 N
L898_g7743 Steinernema monticolum L898_g7743 N
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N
MhA1_Contig128.frz3.gene5 Meloidogyne hapla MhA1_Contig128.frz3.gene5 N
MhA1_Contig2971.frz3.fgene1 Meloidogyne hapla MhA1_Contig2971.frz3.fgene1 N
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N
NECAME_10840 Necator americanus NECAME_10840 N
NECAME_16525 Necator americanus NECAME_16525 N
NECAME_17555 Necator americanus NECAME_17555 N
NECAME_17981 Necator americanus NECAME_17981 N
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N
nOo.2.0.1.g01970 Onchocerca ochengi nOo.2.0.1.g01970 N
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N
SMUV_0000499601 Syphacia muris SMUV_0000499601 N
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N
TASK_0000475801 Taenia asiatica TASK_0000475801 N
TCNE_0000332201 Toxocara canis TCNE_0000332201 N
TCNE_0000520101 Toxocara canis TCNE_0000520101 N
TCNE_0001025901 Toxocara canis TCNE_0001025901 N
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N
TsM_000111500 Taenia solium TsM_000111500 N
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N