Cagra.0542s0036 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0542s0036 T285969_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.718 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0542s0036.1.p Myb 14 61
Cagra.0542s0036.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB51 Arabidopsis thaliana AT1G18570 D 0.718
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.663
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.699
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.909
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.697
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.663
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.718
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.845
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.718
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.845
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.718
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.697
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.909
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.828
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.791
Aquca_073_00013 Aquilegia coerulea Aquca_073_00013 I 0.661
Cucsa.318610 Cucumis sativus Cucsa.318610 I 0.679
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.750
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.781
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.736
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.788
PK27708.1 Cannabis sativa PK27708.1 I 0.749
MDP0000607330 Malus domestica MDP0000607330 I 0.668
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.855
PK14811.1 Cannabis sativa PK14811.1 I 0.702
PK01174.1 Cannabis sativa PK01174.1 I 0.698
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.700
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.828
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.721
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.697
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.879
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.681
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.662
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.674
MDP0000119725 Malus domestica MDP0000119725 I 0.668
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.680
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.680
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.774
Lus10010273.g Linum usitatissimum Lus10010273.g I 0.666
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.696
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.681
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.719
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.676
Bo5g025570 Brassica oleracea Bo5g025570 I 0.721
Bra008131 Brassica rapa Bra008131 I 0.703
Bra005949 Brassica rapa Bra005949 I 0.813
Bo9g175680 Brassica oleracea Bo9g175680 I 0.835
Bo9g014610 Brassica oleracea Bo9g014610 I 0.879
Bo9g014380 Brassica oleracea Bo9g014380 I 0.708
Bo8g104300 Brassica oleracea Bo8g104300 I 0.711
Bo8g067910 Brassica oleracea Bo8g067910 I 0.710
Bo7g098590 Brassica oleracea Bo7g098590 I 0.869
Bo7g098110 Brassica oleracea Bo7g098110 I 0.694
Bo6g118350 Brassica oleracea Bo6g118350 I 0.719
Bra012961 Brassica rapa Bra012961 I 0.869
Bo3g004500 Brassica oleracea Bo3g004500 I 0.805
Bo2g161590 Brassica oleracea Bo2g161590 I 0.832
Bo2g161180 Brassica oleracea Bo2g161180 I 0.677
Bo2g080900 Brassica oleracea Bo2g080900 I 0.714
MYB28 Arabidopsis thaliana AT5G61420 I 0.909
MYB34 Arabidopsis thaliana AT5G60890 I 0.697
MYB76 Arabidopsis thaliana AT5G07700 I 0.872
MYB29 Arabidopsis thaliana AT5G07690 I 0.828
MYB122 Arabidopsis thaliana AT1G74080 I 0.720
Bra035954 Brassica rapa Bra035954 I 0.708
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.664
TCM_014091 Theobroma cacao TCM_014091 I 0.711
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.909
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.684
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.672
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.697
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.812
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.725
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.718
Cla013211 Citrullus lanatus Cla013211 I 0.679
Bra035929 Brassica rapa Bra035929 I 0.879
Bra031035 Brassica rapa Bra031035 I 0.711
Bra029350 Brassica rapa Bra029350 I 0.662
Bra029349 Brassica rapa Bra029349 I 0.677
Bra029311 Brassica rapa Bra029311 I 0.824
Bra025666 Brassica rapa Bra025666 I 0.721
Bra016553 Brassica rapa Bra016553 I 0.710
Bra015939 Brassica rapa Bra015939 I 0.719
Bra013000 Brassica rapa Bra013000 I 0.697