Bo5g030540 (Brassica oleracea)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bo5g030540 T319927_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.980 0.980
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.878 0.878
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g030540.1 RWP-RK 531 579

Links

Other RWP-RK family TFs
Other Brassica oleracea TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.000
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.000
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.000
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.000
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.000
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.000
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.000
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.000
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.000
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Pm004396 Prunus mume Pm004396 I 0.000
30199.m000879 Ricinus communis 30199.m000879 I 0.000
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.000
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.000
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.000
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.000
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.000
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.000
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.000
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.000
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.000
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.000
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.000
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.000
MTR_1g090710 Medicago truncatula MTR_1g090710 N 0.000