CGI_10028818 (Crassostrea gigas)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CGI_10028818 T327030_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.423 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC31179 Sox 185 253

Links

Other Sox family TFs
Other Crassostrea gigas TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hmg20b Mus musculus ENSMUSG00000020232 D 0.423
LotgiG231408 Lottia gigantea LotgiG231408 I 0.586
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.423
Aan_R011684 Calypte anna Aan_R011684 I 0.423
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.466
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.482
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.482
SMAR000790 Strigamia maritima SMAR000790 I 0.488
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.458
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.480
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.423
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.437
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.423
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.437
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.437
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.423
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.423
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.423
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.423
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.423
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.579
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.506
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.506
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.440
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.440
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.423
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.423
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.423
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.503
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.462
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.423
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.424
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.555
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.472
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.472
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.555
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.423
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.423
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.423
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.423
hmg20b Danio rerio ENSDARG00000042045 I 0.423
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.440
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.440
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.423
HMG20B Gallus gallus ENSGALG00000027838 I 0.423
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.437
HMG20B Homo sapiens ENSG00000064961 I 0.423
HMG20B Felis catus ENSFCAG00000026167 I 0.423
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.423
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.416
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.484
hmg20a Danio rerio ENSDARG00000031198 I 0.433
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.423
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.423
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.423
HMG20B Canis familiaris ENSCAFG00000019215 I 0.423
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.423
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.423
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.423
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.423
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.423
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.437
HMG20B Procavia capensis ENSPCAG00000010772 I 0.423
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.423
hmg20b Oryzias latipes ENSORLG00000004640 I 0.437
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.437
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.423
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.423
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.451
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.423
CapteG191691 Capitella teleta CapteG191691 I 0.416
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.423
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.423
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.423
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.423
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.440
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.488
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.423
TC011144 Tribolium castaneum TC011144 N 0.474