GLYMA13G05140 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA13G05140 T330289_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.429 0.537
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.429 0.537
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.422 0.507
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.422 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G05140.2 Sox 466 532

Links

Other Sox family TFs
Other Glycine max TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hmg20b Mus musculus ENSMUSG00000020232 D
TriadG23407 Trichoplax adhaerens TriadG23407 I
YQE_10385 Dendroctonus ponderosae YQE_10385 I
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I
SMAR002604 Strigamia maritima SMAR002604 I
SMAR000790 Strigamia maritima SMAR000790 I
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I
LotgiG231408 Lottia gigantea LotgiG231408 I
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I
HMG20B Tursiops truncatus ENSTTRG00000008832 I
eef2l2 Takifugu rubripes ENSTRUG00000017921 I
hmg20a Takifugu rubripes ENSTRUG00000016127 I
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I
HMG20B Taeniopygia guttata ENSTGUG00000000169 I
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I
Hmg20b Rattus norvegicus ENSRNOG00000020601 I
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I
hmg20a.L Xenopus laevis XB-GENE-955359 I
hmg20a Xenopus tropicalis XB-GENE-955353 I
hmg20b.L Xenopus laevis XB-GENE-5809135 I
hmg20b Xenopus tropicalis XB-GENE-5809048 I
hmg20b.S Xenopus laevis XB-GENE-17338323 I
LDEC010438 Leptinotarsa decemlineata LDEC010438 I
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I
Pvit_08123 Pogona vitticeps Pvit_08123 I
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I
Gfo_R007604 Geospiza fortis Gfo_R007604 I
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I
Afo_R007636 Aptenodytes forsteri Afo_R007636 I
Aan_R011684 Calypte anna Aan_R011684 I
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I
HMG20B Gorilla gorilla ENSGGOG00000014805 I
HMG20B Gallus gallus ENSGALG00000027838 I
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I
HMG20B Homo sapiens ENSG00000064961 I
HMG20B Felis catus ENSFCAG00000026167 I
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I
hmg20b Danio rerio ENSDARG00000042045 I
hmg20a Danio rerio ENSDARG00000031198 I
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I
HMG20B Cavia porcellus ENSCPOG00000010777 I
HMG20B Callithrix jacchus ENSCJAG00000003488 I
HMG20B Canis familiaris ENSCAFG00000019215 I
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I
CGI_10028818 Crassostrea gigas CGI_10028818 I
HMG20B Monodelphis domestica ENSMODG00000006884 I
HMG20B Procavia capensis ENSPCAG00000010772 I
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I
hmg20b Oryzias latipes ENSORLG00000004640 I
hmg20a Oryzias latipes ENSORLG00000001794 I
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I
HMG20B Otolemur garnettii ENSOGAG00000014171 I
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I
CapteG191691 Capitella teleta CapteG191691 I
HMG20B Myotis lucifugus ENSMLUG00000022392 I
HMG20B Meleagris gallopavo ENSMGAG00000001362 I
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I
HMG20B Loxodonta africana ENSLAFG00000007845 I
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I
TC011144 Tribolium castaneum TC011144 N