Bostr.25463s0218 (Boechera stricta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Bostr.25463s0218 T334388_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.692 0.917
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.692 0.917
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.25463s0218.1.p Sox 138 205
Bostr.25463s0218.1.p Sox 255 321
Bostr.25463s0218.1.p Sox 381 449

Links

Other Sox family TFs
Other Boechera stricta TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB13 Arabidopsis thaliana AT4G11080 D 0.692
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.481
30190.m010807 Ricinus communis 30190.m010807 I 0.468
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.479
mgf015439m Mimulus guttatus mgf015439m I 0.482
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.467
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.601
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.587
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.671
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.679
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.562
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.417
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.465
Pm024077 Prunus mume Pm024077 I 0.486
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.493
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.451
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.510
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.526
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.489
MDP0000268093 Malus domestica MDP0000268093 I 0.431
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.441
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.514
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.554
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.661
PK10992.1 Cannabis sativa PK10992.1 I 0.468
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.422
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.420
HMGB6 Arabidopsis thaliana AT4G23800 I 0.582
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.420
Bo1g037180 Brassica oleracea Bo1g037180 I 0.529
Bra013731 Brassica rapa Bra013731 I 0.529
Bra035256 Brassica rapa Bra035256 I 0.567
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.445
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.658
OBART02G11160 Oryza barthii OBART02G11160 I 0.420
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.420
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.420
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.418
Cla011101 Citrullus lanatus Cla011101 I 0.474
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.441
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.495
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.509
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.486
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.424
Si017040m.g Setaria italica Si017040m.g I 0.420
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.443
TCM_016416 Theobroma cacao TCM_016416 I 0.505
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.428
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.454
Ca_05811 Cicer arietinum Ca_05811 I 0.441