PK07402.1 (Cannabis sativa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 PK07402.1 T010062_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00		 Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.743 0.878
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.704 0.796
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.702 0.837
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.700 0.837
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.700 0.837
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.700 0.837
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.687 0.857
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.687 0.857
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.681 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01097_2.00 AP2 51 102

DNA Binding Domains

Protein ID Domain From To Sequence
PK07402.1 AP2 75 126

Links

Other AP2 family TFs
Other Cannabis sativa TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Bo2g149670 Brassica oleracea Bo2g149670 N 0.000
Bo7g030310 Brassica oleracea Bo7g030310 N 0.000
Bo7g089080 Brassica oleracea Bo7g089080 N 0.000
Bo9g009240 Brassica oleracea Bo9g009240 N 0.000
Bo9g009260 Brassica oleracea Bo9g009260 N 0.000
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Bra015156 Brassica rapa Bra015156 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
Bra037509 Brassica rapa Bra037509 N 0.000
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.000
SCL21 Arabidopsis thaliana AT2G04890 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000