Usf1 (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000004255 T037172_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000005811 bHLH 200 255

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28752.m000339 Ricinus communis 28752.m000339 I
29169.m000017 Ricinus communis 29169.m000017 I
29805.m001494 Ricinus communis 29805.m001494 I
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I
AP2 Arabidopsis thaliana AT4G36920 I
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I
BGIOSGA013826 Oryza indica BGIOSGA013826 I
BGIOSGA017250 Oryza indica BGIOSGA017250 I
BGIOSGA020813 Oryza indica BGIOSGA020813 I
BGIOSGA025426 Oryza indica BGIOSGA025426 I
Bo1g004960 Brassica oleracea Bo1g004960 I
Bo4g070350 Brassica oleracea Bo4g070350 I
Bo7g064000 Brassica oleracea Bo7g064000 I
Bo7g118400 Brassica oleracea Bo7g118400 I
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I
Bra011741 Brassica rapa Bra011741 I
Bra011939 Brassica rapa Bra011939 I
Bra012139 Brassica rapa Bra012139 I
Bra017809 Brassica rapa Bra017809 I
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I
Carubv10004818m.g Capsella rubella Carubv10004818m.g I
Carubv10025387m.g Capsella rubella Carubv10025387m.g I
Carubv10026667m.g Capsella rubella Carubv10026667m.g I
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I
Ca_02499 Cicer arietinum Ca_02499 I
Ca_09295 Cicer arietinum Ca_09295 I
Ca_12010 Cicer arietinum Ca_12010 I
Ca_14618 Cicer arietinum Ca_14618 I
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I
Cla000716 Citrullus lanatus Cla000716 I
Cla018124 Citrullus lanatus Cla018124 I
Cla018549 Citrullus lanatus Cla018549 I
Cla020549 Citrullus lanatus Cla020549 I
Cucsa.051660 Cucumis sativus Cucsa.051660 I
Cucsa.065640 Cucumis sativus Cucsa.065640 I
Cucsa.102550 Cucumis sativus Cucsa.102550 I
Cucsa.307230 Cucumis sativus Cucsa.307230 I
Cucsa.367290 Cucumis sativus Cucsa.367290 I
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I
F775_32962 Aegilops tauschii F775_32962 I
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I
GLYMA01G39520 Glycine max GLYMA01G39520 I
GLYMA03G33470 Glycine max GLYMA03G33470 I
GLYMA05G18041 Glycine max GLYMA05G18041 I
GLYMA11G15650 Glycine max GLYMA11G15650 I
GLYMA12G07800 Glycine max GLYMA12G07800 I
GLYMA13G40470 Glycine max GLYMA13G40470 I
GLYMA15G04930 Glycine max GLYMA15G04930 I
GLYMA17G18640 Glycine max GLYMA17G18640 I
GLYMA19G36200 Glycine max GLYMA19G36200 I
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I
GRMZM2G160730 Zea mays GRMZM2G160730 I
GRMZM2G174784 Zea mays GRMZM2G174784 I
GRMZM2G176175 Zea mays GRMZM2G176175 I
GRMZM2G416701 Zea mays GRMZM2G416701 I
GRMZM2G700665 Zea mays GRMZM2G700665 I
GRMZM5G862109 Zea mays GRMZM5G862109 I
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I
LPERR05G01420 Leersia perrieri LPERR05G01420 I
LPERR06G18460 Leersia perrieri LPERR06G18460 I
Lus10004990.g Linum usitatissimum Lus10004990.g I
Lus10009374.g Linum usitatissimum Lus10009374.g I
Lus10015055.g Linum usitatissimum Lus10015055.g I
Lus10018124.g Linum usitatissimum Lus10018124.g I
Lus10019331.g Linum usitatissimum Lus10019331.g I
Lus10019905.g Linum usitatissimum Lus10019905.g I
Lus10023165.g Linum usitatissimum Lus10023165.g I
Lus10026477.g Linum usitatissimum Lus10026477.g I
Lus10036141.g Linum usitatissimum Lus10036141.g I
Lus10041595.g Linum usitatissimum Lus10041595.g I
MDP0000137561 Malus domestica MDP0000137561 I
MDP0000163645 Malus domestica MDP0000163645 I
MDP0000181606 Malus domestica MDP0000181606 I
MDP0000200319 Malus domestica MDP0000200319 I
mgf005133m Mimulus guttatus mgf005133m I
mgf009315m Mimulus guttatus mgf009315m I
mgf010466m Mimulus guttatus mgf010466m I
mgf021945m Mimulus guttatus mgf021945m I
MLOC_43041 Hordeum vulgare MLOC_43041 I
MLOC_43575 Hordeum vulgare MLOC_43575 I
MTR_2g093060 Medicago truncatula MTR_2g093060 I
MTR_4g061200 Medicago truncatula MTR_4g061200 I
MTR_4g094868 Medicago truncatula MTR_4g094868 I
MTR_5g016810 Medicago truncatula MTR_5g016810 I
MTR_7g100590 Medicago truncatula MTR_7g100590 I
OB03G45870 Oryza brachyantha OB03G45870 I
OB06G29960 Oryza brachyantha OB06G29960 I
OBART07G08110 Oryza barthii OBART07G08110 I
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I
OLONG_021321 Oryza longistaminata OLONG_021321 I
OLONG_026757 Oryza longistaminata OLONG_026757 I
OMERI03G35820 Oryza meridionalis OMERI03G35820 I
OMERI04G22900 Oryza meridionalis OMERI04G22900 I
OMERI06G22190 Oryza meridionalis OMERI06G22190 I
OMERI07G06850 Oryza meridionalis OMERI07G06850 I
ONIVA03G25220 Oryza nivara ONIVA03G25220 I
ONIVA03G40610 Oryza nivara ONIVA03G40610 I
ONIVA04G25920 Oryza nivara ONIVA04G25920 I
ONIVA06G26190 Oryza nivara ONIVA06G26190 I
OPUNC03G36030 Oryza punctata OPUNC03G36030 I
OPUNC04G24930 Oryza punctata OPUNC04G24930 I
OPUNC05G01480 Oryza punctata OPUNC05G01480 I
OPUNC06G19990 Oryza punctata OPUNC06G19990 I
OPUNC07G07690 Oryza punctata OPUNC07G07690 I
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I
OS03G0818800 Oryza sativa OS03G0818800 I
OS05G0121600 Oryza sativa OS05G0121600 I
OS07G0235800 Oryza sativa OS07G0235800 I
P93632_MAIZE Zea mays P93632_MAIZE D
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I
Pavir.J11433 Panicum virgatum Pavir.J11433 I
Pavir.J23348 Panicum virgatum Pavir.J23348 I
Pavir.J23520 Panicum virgatum Pavir.J23520 I
Pavir.J27340 Panicum virgatum Pavir.J27340 I
Pavir.J37968 Panicum virgatum Pavir.J37968 I
Pavir.J41060 Panicum virgatum Pavir.J41060 I
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I
PK02403.1 Cannabis sativa PK02403.1 I
PK07183.1 Cannabis sativa PK07183.1 I
PK14490.1 Cannabis sativa PK14490.1 I
Pm000974 Prunus mume Pm000974 I
Pm002492 Prunus mume Pm002492 I
Pm030172 Prunus mume Pm030172 I
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D
RAP2.7 Arabidopsis thaliana AT2G28550 D
RAP2.7 Vitis vinifera VIT_06s0004g03590 I
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I
Sb01g003400 Sorghum bicolor Sb01g003400 I
Sb02g007000 Sorghum bicolor Sb02g007000 I
Sb06g030670 Sorghum bicolor Sb06g030670 I
Sb10g025053 Sorghum bicolor Sb10g025053 I
Si006371m.g Setaria italica Si006371m.g I
Si012635m.g Setaria italica Si012635m.g I
Si025305m.g Setaria italica Si025305m.g I
Si029636m.g Setaria italica Si029636m.g I
Si036068m.g Setaria italica Si036068m.g I
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I
TCM_000665 Theobroma cacao TCM_000665 I
TCM_022077 Theobroma cacao TCM_022077 I
TCM_042000 Theobroma cacao TCM_042000 I
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I
TOE3 Arabidopsis thaliana AT5G67180 I
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I
TOE3 Vitis vinifera VIT_07s0031g00220 I
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I