cassava24954.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava24954.valid.m1 T006862_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.859 0.969
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.845 0.959
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.844 0.980
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.813 0.847
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24954.valid.m1 AP2 166 215
cassava24954.valid.m1 AP2 258 309

Links

Other AP2 family TFs
Other Manihot esculenta TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.866
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.866
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.866
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.866
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.866
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.866
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.866
OS05G0121600 Oryza sativa OS05G0121600 I 0.866
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.866
Si025305m.g Setaria italica Si025305m.g I 0.866
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.866
Ca_02499 Cicer arietinum Ca_02499 I 0.866
28752.m000339 Ricinus communis 28752.m000339 I 0.866
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.866
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.866
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.866
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.866
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.866
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.866
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.866
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.866
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.865
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.865
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.865
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.865
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.865
TCM_022077 Theobroma cacao TCM_022077 I 0.865
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.865
Pm002492 Prunus mume Pm002492 I 0.865
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.865
MDP0000200319 Malus domestica MDP0000200319 I 0.865
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.865
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.864
PK07183.1 Cannabis sativa PK07183.1 I 0.864
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.863
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.863
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.863
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.862
Pm000974 Prunus mume Pm000974 I 0.862
MDP0000181606 Malus domestica MDP0000181606 I 0.862
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.861
F775_32962 Aegilops tauschii F775_32962 I 0.861
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.861
TCM_042000 Theobroma cacao TCM_042000 I 0.861
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.861
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.861
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.861
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.861
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.861
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.861
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.860
29805.m001494 Ricinus communis 29805.m001494 I 0.860
AP2 Arabidopsis thaliana AT4G36920 I 0.859
Bo1g004960 Brassica oleracea Bo1g004960 I 0.859
Bo7g118400 Brassica oleracea Bo7g118400 I 0.859
Bra011741 Brassica rapa Bra011741 I 0.859
Bra017809 Brassica rapa Bra017809 I 0.859
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.859
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.859
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.859
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.859
Ca_09295 Cicer arietinum Ca_09295 I 0.859
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.859
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.859
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.859
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.859
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.858
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.858
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.858
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.858
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.858
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.858
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.858
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.858
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.858
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.858
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.858
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.858
Cla000716 Citrullus lanatus Cla000716 I 0.858
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.858
mgf021945m Mimulus guttatus mgf021945m I 0.858
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.858
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.858
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.858
PK02403.1 Cannabis sativa PK02403.1 I 0.858
Cla018124 Citrullus lanatus Cla018124 I 0.857
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.857
mgf009315m Mimulus guttatus mgf009315m I 0.857
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.857
TCM_000665 Theobroma cacao TCM_000665 I 0.855
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.855
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.855
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.854
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.852
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.850
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.850
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.850
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.850
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.850
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.850
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.850
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.850
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.850
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.850
Si012635m.g Setaria italica Si012635m.g I 0.850
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.850
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.850
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.849
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.849
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.849
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.848
29169.m000017 Ricinus communis 29169.m000017 I 0.848
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.848
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.847
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.847
Ca_12010 Cicer arietinum Ca_12010 I 0.847
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.846
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.845
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.845
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.844
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.844
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.844
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.844
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.844
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.844
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.844
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.844
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.844
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.843
MDP0000137561 Malus domestica MDP0000137561 I 0.843
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.843
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.842
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.842
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.842
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.842
Pm030172 Prunus mume Pm030172 I 0.842
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.842
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.842
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.841
Bo4g070350 Brassica oleracea Bo4g070350 I 0.841
Bra011939 Brassica rapa Bra011939 I 0.841
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.841
OBART07G08110 Oryza barthii OBART07G08110 I 0.841
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.841
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.841
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.841
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.841
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.841
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.841
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.841
OS07G0235800 Oryza sativa OS07G0235800 I 0.841
Ca_14618 Cicer arietinum Ca_14618 I 0.841
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.841
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.840
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.839
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.839
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.838
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.838
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.838
Si036068m.g Setaria italica Si036068m.g I 0.838
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.838
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.838
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.838
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.838
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.838
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.837
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.837
OB06G29960 Oryza brachyantha OB06G29960 I 0.837
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.837
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.837
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.837
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.837
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.837
Si029636m.g Setaria italica Si029636m.g I 0.837
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.837
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.837
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.837
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.836
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.836
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.836
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.836
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.836
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.836
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.835
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.835
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.834
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.833
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.833
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.833
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.828
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.828
OB03G45870 Oryza brachyantha OB03G45870 I 0.828
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.825
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.825
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.823
mgf005133m Mimulus guttatus mgf005133m I 0.823
mgf010466m Mimulus guttatus mgf010466m I 0.823
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.822
MDP0000163645 Malus domestica MDP0000163645 I 0.822
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.822
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.822
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.821
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.820
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.819
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.818
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.815
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.815
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.815
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.813
P93632_MAIZE Zea mays P93632_MAIZE D 0.813
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.813
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.812
TOE3 Arabidopsis thaliana AT5G67180 I 0.808
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.808
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.808
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.808
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.808
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.808
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.808
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.807
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.807
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.806
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.805
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.803
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.803
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.803
Bo7g064000 Brassica oleracea Bo7g064000 I 0.802
Bra012139 Brassica rapa Bra012139 I 0.802
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.802
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.800
Cla020549 Citrullus lanatus Cla020549 I 0.795
OS03G0818800 Oryza sativa OS03G0818800 I 0.792
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.791
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.787
Cla018549 Citrullus lanatus Cla018549 I 0.783
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.715
Si006371m.g Setaria italica Si006371m.g I 0.704
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.701
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
PK14490.1 Cannabis sativa PK14490.1 I 0.689
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.684