Lus10009374.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10009374.g T008767_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.857 0.990
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.827 0.918
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.826 0.939
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.811 0.867
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009374 AP2 116 165
Lus10009374 AP2 208 259

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.872
29169.m000017 Ricinus communis 29169.m000017 I 0.871
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.871
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.868
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.862
AP2 Arabidopsis thaliana AT4G36920 I 0.857
Bo1g004960 Brassica oleracea Bo1g004960 I 0.857
Bo7g118400 Brassica oleracea Bo7g118400 I 0.857
Bra011741 Brassica rapa Bra011741 I 0.857
Bra017809 Brassica rapa Bra017809 I 0.857
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.857
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.857
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.857
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.857
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.857
Ca_09295 Cicer arietinum Ca_09295 I 0.857
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.857
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.857
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.857
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.857
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.856
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.856
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.856
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.856
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.856
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.856
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.856
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.856
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.856
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.856
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.856
Cla000716 Citrullus lanatus Cla000716 I 0.856
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.856
mgf009315m Mimulus guttatus mgf009315m I 0.856
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.856
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.856
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.856
PK02403.1 Cannabis sativa PK02403.1 I 0.856
29805.m001494 Ricinus communis 29805.m001494 I 0.855
TCM_000665 Theobroma cacao TCM_000665 I 0.853
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.853
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.853
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.852
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.850
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.849
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.849
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.849
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.849
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.849
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.849
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.849
OS05G0121600 Oryza sativa OS05G0121600 I 0.849
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.849
Si025305m.g Setaria italica Si025305m.g I 0.849
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.849
Ca_02499 Cicer arietinum Ca_02499 I 0.849
28752.m000339 Ricinus communis 28752.m000339 I 0.849
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.849
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.849
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.849
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.849
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.849
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.849
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.849
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.849
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.849
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.849
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.848
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.848
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.848
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.848
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.848
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.848
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.848
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.848
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.848
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.848
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.848
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.848
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.848
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.848
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.848
Si012635m.g Setaria italica Si012635m.g I 0.848
TCM_022077 Theobroma cacao TCM_022077 I 0.848
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.848
Pm002492 Prunus mume Pm002492 I 0.848
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.848
MDP0000200319 Malus domestica MDP0000200319 I 0.848
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.848
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.847
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.847
F775_32962 Aegilops tauschii F775_32962 I 0.847
TCM_042000 Theobroma cacao TCM_042000 I 0.847
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.847
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.847
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.847
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.847
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.846
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.846
mgf021945m Mimulus guttatus mgf021945m I 0.846
PK07183.1 Cannabis sativa PK07183.1 I 0.846
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.845
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.845
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.844
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.844
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.844
Pm000974 Prunus mume Pm000974 I 0.844
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.844
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.844
MDP0000181606 Malus domestica MDP0000181606 I 0.844
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.843
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.843
Cla018124 Citrullus lanatus Cla018124 I 0.842
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.842
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.842
MDP0000137561 Malus domestica MDP0000137561 I 0.841
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.841
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.840
Pm030172 Prunus mume Pm030172 I 0.840
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.840
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.840
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.840
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.839
Ca_14618 Cicer arietinum Ca_14618 I 0.836
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.836
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.835
OB06G29960 Oryza brachyantha OB06G29960 I 0.835
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.835
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.835
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.835
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.835
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.835
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.835
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.833
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.832
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.832
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.831
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.831
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.831
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.831
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.831
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.831
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.831
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.830
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.829
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.829
Ca_12010 Cicer arietinum Ca_12010 I 0.829
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.829
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.827
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.827
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.826
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.826
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.826
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.826
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.826
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.826
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.826
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.826
Bo4g070350 Brassica oleracea Bo4g070350 I 0.825
Bra011939 Brassica rapa Bra011939 I 0.825
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.824
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.824
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.823
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.823
OB03G45870 Oryza brachyantha OB03G45870 I 0.823
OBART07G08110 Oryza barthii OBART07G08110 I 0.823
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.823
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.823
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.823
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.823
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.823
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.823
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.823
OS07G0235800 Oryza sativa OS07G0235800 I 0.823
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.823
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.823
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.823
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.821
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.821
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.821
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.821
Si029636m.g Setaria italica Si029636m.g I 0.821
mgf005133m Mimulus guttatus mgf005133m I 0.821
mgf010466m Mimulus guttatus mgf010466m I 0.821
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.821
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.821
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.820
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.820
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.820
Si036068m.g Setaria italica Si036068m.g I 0.820
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.820
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.820
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.820
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.820
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.818
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.817
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.816
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.816
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.815
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.815
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.812
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.811
P93632_MAIZE Zea mays P93632_MAIZE D 0.811
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.811
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.809
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.809
TOE3 Arabidopsis thaliana AT5G67180 I 0.806
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.806
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.806
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.806
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.806
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.805
MDP0000163645 Malus domestica MDP0000163645 I 0.805
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.804
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.804
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.802
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.802
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.801
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.801
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.801
Bo7g064000 Brassica oleracea Bo7g064000 I 0.800
Bra012139 Brassica rapa Bra012139 I 0.800
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.800
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.800
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.795
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.792
Cla018549 Citrullus lanatus Cla018549 I 0.790
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.790
OS03G0818800 Oryza sativa OS03G0818800 I 0.788
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.785
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.785
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.784
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.784
Cla020549 Citrullus lanatus Cla020549 I 0.779
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.773
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.713
Si006371m.g Setaria italica Si006371m.g I 0.702
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.698
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.679
PK14490.1 Cannabis sativa PK14490.1 I 0.679