Ciclev10025364m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10025364m.g T008055_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.831 0.939
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.800 0.869
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.799 0.889
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.784 0.818
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10025364m AP2 158 208
Ciclev10025364m AP2 250 301
Ciclev10025566m AP2 158 208
Ciclev10025566m AP2 250 301
Ciclev10026056m AP2 158 208
Ciclev10026056m AP2 250 301

Links

Other AP2 family TFs
Other Citrus clementina TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.864
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.833
TCM_000665 Theobroma cacao TCM_000665 I 0.833
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.833
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.832
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.832
AP2 Arabidopsis thaliana AT4G36920 I 0.831
Bo1g004960 Brassica oleracea Bo1g004960 I 0.831
Bo7g118400 Brassica oleracea Bo7g118400 I 0.831
Bra011741 Brassica rapa Bra011741 I 0.831
Bra017809 Brassica rapa Bra017809 I 0.831
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.831
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.831
Ca_09295 Cicer arietinum Ca_09295 I 0.831
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.831
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.831
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.831
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.831
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.830
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.830
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.830
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.830
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.830
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.830
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.830
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.830
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.830
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.830
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.830
Cla000716 Citrullus lanatus Cla000716 I 0.830
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.830
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.830
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.830
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.830
PK02403.1 Cannabis sativa PK02403.1 I 0.830
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.829
mgf009315m Mimulus guttatus mgf009315m I 0.829
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.828
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.828
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.828
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.828
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.828
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.828
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.828
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.828
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.828
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.828
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.828
Si012635m.g Setaria italica Si012635m.g I 0.828
29805.m001494 Ricinus communis 29805.m001494 I 0.828
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.827
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.823
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.823
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.822
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.822
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.822
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.822
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.822
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.822
OS05G0121600 Oryza sativa OS05G0121600 I 0.822
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.822
Si025305m.g Setaria italica Si025305m.g I 0.822
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.822
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.822
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.822
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.822
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.822
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.822
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.822
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.822
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.822
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.822
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.822
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.821
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.821
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.821
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.821
TCM_022077 Theobroma cacao TCM_022077 I 0.821
Ca_02499 Cicer arietinum Ca_02499 I 0.821
Pm002492 Prunus mume Pm002492 I 0.821
28752.m000339 Ricinus communis 28752.m000339 I 0.821
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.821
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.821
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.821
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.820
F775_32962 Aegilops tauschii F775_32962 I 0.820
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.820
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.820
TCM_042000 Theobroma cacao TCM_042000 I 0.820
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.820
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.820
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.820
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.820
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.820
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.820
MDP0000200319 Malus domestica MDP0000200319 I 0.820
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.819
29169.m000017 Ricinus communis 29169.m000017 I 0.819
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.819
mgf021945m Mimulus guttatus mgf021945m I 0.819
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.819
PK07183.1 Cannabis sativa PK07183.1 I 0.819
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.818
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.818
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.818
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.818
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.817
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.817
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.817
Pm000974 Prunus mume Pm000974 I 0.817
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.817
MDP0000181606 Malus domestica MDP0000181606 I 0.817
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.816
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.816
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.816
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.816
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.816
Cla018124 Citrullus lanatus Cla018124 I 0.815
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.815
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.815
MDP0000137561 Malus domestica MDP0000137561 I 0.814
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.814
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.813
Pm030172 Prunus mume Pm030172 I 0.813
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.813
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.813
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.813
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.812
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.810
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.810
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.810
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.810
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.810
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.810
Ca_14618 Cicer arietinum Ca_14618 I 0.810
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.810
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.809
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.808
OB06G29960 Oryza brachyantha OB06G29960 I 0.808
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.808
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.808
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.808
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.808
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.806
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.805
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.805
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.805
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.804
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.803
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.803
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.803
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.802
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.802
OB03G45870 Oryza brachyantha OB03G45870 I 0.802
OBART07G08110 Oryza barthii OBART07G08110 I 0.802
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.802
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.802
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.802
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.802
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.802
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.802
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.802
OS07G0235800 Oryza sativa OS07G0235800 I 0.802
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.802
Ca_12010 Cicer arietinum Ca_12010 I 0.802
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.802
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.802
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.801
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.800
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.800
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.800
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.800
Si029636m.g Setaria italica Si029636m.g I 0.800
Si036068m.g Setaria italica Si036068m.g I 0.800
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.800
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.800
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.800
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.800
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.799
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.799
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.799
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.799
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.799
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.799
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.799
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.799
Bo4g070350 Brassica oleracea Bo4g070350 I 0.798
Bra011939 Brassica rapa Bra011939 I 0.798
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.798
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.798
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.797
Cla018549 Citrullus lanatus Cla018549 I 0.797
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.796
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.796
mgf005133m Mimulus guttatus mgf005133m I 0.794
mgf010466m Mimulus guttatus mgf010466m I 0.794
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.794
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.793
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.793
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.792
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.791
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.790
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.789
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.788
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.785
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.785
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.784
P93632_MAIZE Zea mays P93632_MAIZE D 0.784
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.783
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.782
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.782
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.781
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.781
MDP0000163645 Malus domestica MDP0000163645 I 0.781
TOE3 Arabidopsis thaliana AT5G67180 I 0.779
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.779
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.779
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.779
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.778
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.777
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.777
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.776
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.776
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.774
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.774
Bo7g064000 Brassica oleracea Bo7g064000 I 0.773
Bra012139 Brassica rapa Bra012139 I 0.773
OS03G0818800 Oryza sativa OS03G0818800 I 0.771
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.767
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.764
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.762
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.758
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.758
Cla020549 Citrullus lanatus Cla020549 I 0.757
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.753
Si006371m.g Setaria italica Si006371m.g I 0.709
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.686