CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene25394-v1.0-hybrid
(
Fragaria vesca
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gene25394-v1.0-hybrid
T008432_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.801
0.881
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.787
0.871
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD
HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.786
0.891
P93632_MAIZE
M09712_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.755
0.782
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna25394.1-v1.0-hybrid
AP2
164
213
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
mrna25394.1-v1.0-hybrid
AP2
256
334
SKYRGVTLHKCGRWEARMGQFLGKKMSLSAYFKEKELWAWWFIVGVTMLACRYIYLGLFDSEVEAARAYDKAAIKCNGR
Links
Other
AP2
family TFs
Other
Fragaria vesca
TFs
236 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LPERR05G01420
Leersia perrieri
LPERR05G01420
I
0.811
OLONG_026757
Oryza longistaminata
OLONG_026757
I
0.811
OPUNC05G01480
Oryza punctata
OPUNC05G01480
I
0.811
Thhalv10004742m.g
Eutrema salsugineum
Thhalv10004742m.g
I
0.809
AMTR_s00035p00205430
Amborella trichopoda
AMTR_s00035p00205430
I
0.808
BGIOSGA018911
Oryza indica
BGIOSGA018911
I
0.808
GLYMA11G15650
Glycine max
GLYMA11G15650
I
0.808
GLYMA12G07800
Glycine max
GLYMA12G07800
I
0.808
GLYMA13G40470
Glycine max
GLYMA13G40470
I
0.808
ORGLA05G0015400
Oryza glaberrima
ORGLA05G0015400
I
0.808
OS05G0121600
Oryza sativa
OS05G0121600
I
0.808
PGSC0003DMG400025390
Solanum tuberosum
PGSC0003DMG400025390
I
0.808
Si025305m.g
Setaria italica
Si025305m.g
I
0.808
RAP2.7
Vitis vinifera
VIT_06s0004g03590
I
0.808
Ca_02499
Cicer arietinum
Ca_02499
I
0.808
28752.m000339
Ricinus communis
28752.m000339
I
0.808
cassava13566.valid.m1
Manihot esculenta
cassava13566.valid.m1
I
0.808
cassava24954.valid.m1
Manihot esculenta
cassava24954.valid.m1
I
0.808
Aquca_027_00133
Aquilegia coerulea
Aquca_027_00133
I
0.808
Eucgr.J02113
Eucalyptus grandis
Eucgr.J02113
I
0.808
orange1.1g010454m.g
Citrus sinensis
orange1.1g010454m.g
I
0.808
Pavir.J11433
Panicum virgatum
Pavir.J11433
I
0.808
Pavir.J23348
Panicum virgatum
Pavir.J23348
I
0.808
chr3.LjT05P05.30.nd
Lotus japonicus
chr3.LjT05P05.30.nd
I
0.808
PDK_20s1506731g001
Phoenix dactylifera
PDK_20s1506731g001
I
0.808
GSMUA_Achr10G03230_001
Musa acuminata
GSMUA_Achr10G03230_001
I
0.807
GSMUA_Achr9G03060_001
Musa acuminata
GSMUA_Achr9G03060_001
I
0.807
PGSC0003DMG400027904
Solanum tuberosum
PGSC0003DMG400027904
I
0.807
POPTR_0016s08530
Populus trichocarpa
POPTR_0016s08530
I
0.807
PRUPE_ppa005230mg
Prunus persica
PRUPE_ppa005230mg
I
0.807
TCM_022077
Theobroma cacao
TCM_022077
I
0.807
VIT_08s0040g03180
Vitis vinifera
VIT_08s0040g03180
I
0.807
Pm002492
Prunus mume
Pm002492
I
0.807
Gorai.002G251500
Gossypium raimondii
Gorai.002G251500
I
0.807
MDP0000200319
Malus domestica
MDP0000200319
I
0.807
SapurV1A.0247s0170
Salix purpurea
SapurV1A.0247s0170
I
0.807
Cucsa.367290
Cucumis sativus
Cucsa.367290
I
0.806
Lus10041595.g
Linum usitatissimum
Lus10041595.g
I
0.806
PK07183.1
Cannabis sativa
PK07183.1
I
0.806
GLYMA03G33470
Glycine max
GLYMA03G33470
I
0.805
MTR_2g093060
Medicago truncatula
MTR_2g093060
I
0.805
LjT39B13.80.nc
Lotus japonicus
LjT39B13.80.nc
I
0.805
GRMZM2G700665
Zea mays
GRMZM2G700665
I
0.804
Pm000974
Prunus mume
Pm000974
I
0.804
MDP0000181606
Malus domestica
MDP0000181606
I
0.804
BRADI2G37800
Brachypodium distachyon
BRADI2G37800
I
0.803
F775_32962
Aegilops tauschii
F775_32962
I
0.803
POPTR_0006s13460
Populus trichocarpa
POPTR_0006s13460
I
0.803
TCM_042000
Theobroma cacao
TCM_042000
I
0.803
Traes_1AS_90F3120F8
Triticum aestivum
Traes_1AS_90F3120F8
I
0.803
Traes_1BS_E68807072
Triticum aestivum
Traes_1BS_E68807072
I
0.803
Traes_1DS_2BB06F54C
Triticum aestivum
Traes_1DS_2BB06F54C
I
0.803
Ciclev10028259m.g
Citrus clementina
Ciclev10028259m.g
I
0.803
Gorai.004G002100
Gossypium raimondii
Gorai.004G002100
I
0.803
SapurV1A.0209s0320
Salix purpurea
SapurV1A.0209s0320
I
0.803
Solyc10g084340.1
Solanum lycopersicum
Solyc10g084340.1
I
0.802
29805.m001494
Ricinus communis
29805.m001494
I
0.802
AP2
Arabidopsis thaliana
AT4G36920
I
0.801
Bo1g004960
Brassica oleracea
Bo1g004960
I
0.801
Bo7g118400
Brassica oleracea
Bo7g118400
I
0.801
Bra011741
Brassica rapa
Bra011741
I
0.801
Bra017809
Brassica rapa
Bra017809
I
0.801
AP2
Arabidopsis lyrata
fgenesh2_kg.7__332__AT4G36920.1
I
0.801
GSMUA_Achr1G09830_001
Musa acuminata
GSMUA_Achr1G09830_001
I
0.801
MTR_4g094868
Medicago truncatula
MTR_4g094868
I
0.801
Solyc03g044300.2
Solanum lycopersicum
Solyc03g044300.2
I
0.801
Ca_09295
Cicer arietinum
Ca_09295
I
0.801
Q9XHD4_PETHY
Petunia x hybrida
Q9XHD4_PETHY
D
0.801
Bostr.7867s1579
Boechera stricta
Bostr.7867s1579
I
0.801
Cagra.4909s0048
Capsella grandiflora
Cagra.4909s0048
I
0.801
Carubv10004818m.g
Capsella rubella
Carubv10004818m.g
I
0.801
GLYMA01G39520
Glycine max
GLYMA01G39520
I
0.800
GLYMA05G18041
Glycine max
GLYMA05G18041
I
0.800
GLYMA17G18640
Glycine max
GLYMA17G18640
I
0.800
GSMUA_Achr1G26080_001
Musa acuminata
GSMUA_Achr1G26080_001
I
0.800
GSMUA_Achr3G13180_001
Musa acuminata
GSMUA_Achr3G13180_001
I
0.800
MTR_5g016810
Medicago truncatula
MTR_5g016810
I
0.800
OGLUM04G27380
Oryza glumaepatula
OGLUM04G27380
I
0.800
ORUFI04G29120
Oryza rufipogon
ORUFI04G29120
I
0.800
PGSC0003DMG400004006
Solanum tuberosum
PGSC0003DMG400004006
I
0.800
PGSC0003DMG400006482
Solanum tuberosum
PGSC0003DMG400006482
I
0.800
POPTR_0007s10780
Populus trichocarpa
POPTR_0007s10780
I
0.800
Solyc02g093150.2
Solanum lycopersicum
Solyc02g093150.2
I
0.800
TOE3
Vitis vinifera
VIT_07s0031g00220
I
0.800
Cla000716
Citrullus lanatus
Cla000716
I
0.800
Cucsa.102550
Cucumis sativus
Cucsa.102550
I
0.800
mgf021945m
Mimulus guttatus
mgf021945m
I
0.800
evm.TU.supercontig_55.116
Carica papaya
evm.TU.supercontig_55.116
I
0.800
Gorai.003G025900
Gossypium raimondii
Gorai.003G025900
I
0.800
SapurV1A.0689s0070
Salix purpurea
SapurV1A.0689s0070
I
0.800
PK02403.1
Cannabis sativa
PK02403.1
I
0.800
TOE3
Arabidopsis thaliana
AT5G67180
I
0.799
TOE3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002628
I
0.799
GSMUA_AchrUn_randomG16200_001
Musa acuminata
GSMUA_AchrUn_randomG16200_001
I
0.799
Cla018124
Citrullus lanatus
Cla018124
I
0.799
Cucsa.307230
Cucumis sativus
Cucsa.307230
I
0.799
mgf009315m
Mimulus guttatus
mgf009315m
I
0.799
Bostr.0568s0140
Boechera stricta
Bostr.0568s0140
I
0.799
Cagra.0342s0004
Capsella grandiflora
Cagra.0342s0004
I
0.799
Carubv10026667m.g
Capsella rubella
Carubv10026667m.g
I
0.799
chr1.CM0033.300.nc
Lotus japonicus
chr1.CM0033.300.nc
I
0.799
TCM_000665
Theobroma cacao
TCM_000665
I
0.797
Gorai.007G215900
Gossypium raimondii
Gorai.007G215900
I
0.797
Gorai.008G077800
Gossypium raimondii
Gorai.008G077800
I
0.797
GSMUA_Achr8G18550_001
Musa acuminata
GSMUA_Achr8G18550_001
I
0.796
Solyc02g064960.2
Solanum lycopersicum
Solyc02g064960.2
I
0.794
Bo7g064000
Brassica oleracea
Bo7g064000
I
0.793
Bra012139
Brassica rapa
Bra012139
I
0.793
BGIOSGA017250
Oryza indica
BGIOSGA017250
I
0.792
GRMZM2G174784
Zea mays
GRMZM2G174784
I
0.792
OMERI04G22900
Oryza meridionalis
OMERI04G22900
I
0.792
ONIVA04G25920
Oryza nivara
ONIVA04G25920
I
0.792
OPUNC04G24930
Oryza punctata
OPUNC04G24930
I
0.792
ORGLA04G0237800
Oryza glaberrima
ORGLA04G0237800
I
0.792
POPTR_0005s18400
Populus trichocarpa
POPTR_0005s18400
I
0.792
Sb06g030670
Sorghum bicolor
Sb06g030670
I
0.792
Si012635m.g
Setaria italica
Si012635m.g
I
0.792
Cucsa.051660
Cucumis sativus
Cucsa.051660
I
0.792
Gorai.009G104200
Gossypium raimondii
Gorai.009G104200
I
0.792
BRADI5G24100
Brachypodium distachyon
BRADI5G24100
I
0.791
Lus10009374.g
Linum usitatissimum
Lus10009374.g
I
0.790
Lus10019331.g
Linum usitatissimum
Lus10019331.g
I
0.790
GSMUA_Achr3G28340_001
Musa acuminata
GSMUA_Achr3G28340_001
I
0.789
GSMUA_Achr6G33140_001
Musa acuminata
GSMUA_Achr6G33140_001
I
0.789
MTR_7g100590
Medicago truncatula
MTR_7g100590
I
0.789
Ca_12010
Cicer arietinum
Ca_12010
I
0.789
29169.m000017
Ricinus communis
29169.m000017
I
0.789
cassava12358.valid.m1
Manihot esculenta
cassava12358.valid.m1
I
0.789
PGSC0003DMG400025479
Solanum tuberosum
PGSC0003DMG400025479
I
0.788
Q9XHD3_PETHY
Petunia x hybrida
Q9XHD3_PETHY
D
0.787
Lus10023165.g
Linum usitatissimum
Lus10023165.g
I
0.787
RAP2.7
Arabidopsis thaliana
AT2G28550
D
0.786
GSMUA_Achr11G23870_001
Musa acuminata
GSMUA_Achr11G23870_001
I
0.786
GSMUA_Achr6G34420_001
Musa acuminata
GSMUA_Achr6G34420_001
I
0.786
VIT_13s0019g03550
Vitis vinifera
VIT_13s0019g03550
I
0.786
cassava2301.valid.m1
Manihot esculenta
cassava2301.valid.m1
I
0.786
Cagra.1809s0003
Capsella grandiflora
Cagra.1809s0003
I
0.786
Carubv10025387m.g
Capsella rubella
Carubv10025387m.g
I
0.786
evm.TU.supercontig_114.55
Carica papaya
evm.TU.supercontig_114.55
I
0.786
Thhalv10016626m.g
Eutrema salsugineum
Thhalv10016626m.g
I
0.786
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.785
LjSGA_005424.1
Lotus japonicus
LjSGA_005424.1
I
0.785
GSMUA_AchrUn_randomG10320_001
Musa acuminata
GSMUA_AchrUn_randomG10320_001
I
0.784
MTR_4g061200
Medicago truncatula
MTR_4g061200
I
0.784
MDP0000137561
Malus domestica
MDP0000137561
I
0.784
Bo4g070350
Brassica oleracea
Bo4g070350
I
0.783
Bra011939
Brassica rapa
Bra011939
I
0.783
GLYMA19G36200
Glycine max
GLYMA19G36200
I
0.783
MLOC_43575
Hordeum vulgare
MLOC_43575
I
0.783
PRUPE_ppa003783mg
Prunus persica
PRUPE_ppa003783mg
I
0.783
Ca_14618
Cicer arietinum
Ca_14618
I
0.783
Pm030172
Prunus mume
Pm030172
I
0.783
Eucgr.I00892
Eucalyptus grandis
Eucgr.I00892
I
0.783
gene23876-v1.0-hybrid
Fragaria vesca
gene23876-v1.0-hybrid
I
0.783
SapurV1A.0038s0220
Salix purpurea
SapurV1A.0038s0220
I
0.783
BGIOSGA025426
Oryza indica
BGIOSGA025426
I
0.782
OBART07G08110
Oryza barthii
OBART07G08110
I
0.782
OGLUM07G07330
Oryza glumaepatula
OGLUM07G07330
I
0.782
OLONG_021321
Oryza longistaminata
OLONG_021321
I
0.782
OMERI07G06850
Oryza meridionalis
OMERI07G06850
I
0.782
ONIVA03G25220
Oryza nivara
ONIVA03G25220
I
0.782
OPUNC07G07690
Oryza punctata
OPUNC07G07690
I
0.782
ORGLA07G0068600
Oryza glaberrima
ORGLA07G0068600
I
0.782
ORUFI07G08180
Oryza rufipogon
ORUFI07G08180
I
0.782
OS07G0235800
Oryza sativa
OS07G0235800
I
0.782
Aquca_010_00628
Aquilegia coerulea
Aquca_010_00628
I
0.782
BRADI1G53650
Brachypodium distachyon
BRADI1G53650
I
0.781
GLYMA15G04930
Glycine max
GLYMA15G04930
I
0.780
GRMZM5G862109
Zea mays
GRMZM5G862109
I
0.780
OPUNC06G19990
Oryza punctata
OPUNC06G19990
I
0.780
Sb01g003400
Sorghum bicolor
Sb01g003400
I
0.780
Si036068m.g
Setaria italica
Si036068m.g
I
0.780
Gorai.011G106200
Gossypium raimondii
Gorai.011G106200
I
0.780
Lus10019905.g
Linum usitatissimum
Lus10019905.g
I
0.780
Lus10026477.g
Linum usitatissimum
Lus10026477.g
I
0.780
Pavir.J23520
Panicum virgatum
Pavir.J23520
I
0.780
Pavir.J41060
Panicum virgatum
Pavir.J41060
I
0.780
AMTR_s00058p00216470
Amborella trichopoda
AMTR_s00058p00216470
I
0.779
GRMZM2G176175
Zea mays
GRMZM2G176175
I
0.779
Sb02g007000
Sorghum bicolor
Sb02g007000
I
0.779
Si029636m.g
Setaria italica
Si029636m.g
I
0.779
Aquca_007_00714
Aquilegia coerulea
Aquca_007_00714
I
0.779
Pavir.Ba03394
Panicum virgatum
Pavir.Ba03394
I
0.779
SapurV1A.1340s0010
Salix purpurea
SapurV1A.1340s0010
I
0.779
BGIOSGA013826
Oryza indica
BGIOSGA013826
I
0.778
BGIOSGA020813
Oryza indica
BGIOSGA020813
I
0.778
OB06G29960
Oryza brachyantha
OB06G29960
I
0.778
OGLUM03G38790
Oryza glumaepatula
OGLUM03G38790
I
0.778
OGLUM06G23380
Oryza glumaepatula
OGLUM06G23380
I
0.778
OMERI03G35820
Oryza meridionalis
OMERI03G35820
I
0.778
OMERI06G22190
Oryza meridionalis
OMERI06G22190
I
0.778
ONIVA03G40610
Oryza nivara
ONIVA03G40610
I
0.778
ONIVA06G26190
Oryza nivara
ONIVA06G26190
I
0.778
OPUNC03G36030
Oryza punctata
OPUNC03G36030
I
0.778
ORUFI03G40640
Oryza rufipogon
ORUFI03G40640
I
0.778
ORUFI06G23930
Oryza rufipogon
ORUFI06G23930
I
0.778
GSMUA_Achr5G07270_001
Musa acuminata
GSMUA_Achr5G07270_001
I
0.777
POPTR_0008s04490
Populus trichocarpa
POPTR_0008s04490
I
0.776
Lus10018124.g
Linum usitatissimum
Lus10018124.g
I
0.776
GSMUA_Achr5G29290_001
Musa acuminata
GSMUA_Achr5G29290_001
I
0.775
GSMUA_Achr8G01980_001
Musa acuminata
GSMUA_Achr8G01980_001
I
0.775
LPERR06G18460
Leersia perrieri
LPERR06G18460
I
0.775
MDP0000163645
Malus domestica
MDP0000163645
I
0.773
Ciclev10011588m.g
Citrus clementina
Ciclev10011588m.g
I
0.771
GSMUA_Achr4G06100_001
Musa acuminata
GSMUA_Achr4G06100_001
I
0.770
OB03G45870
Oryza brachyantha
OB03G45870
I
0.770
GSMUA_Achr9G04270_001
Musa acuminata
GSMUA_Achr9G04270_001
I
0.769
Solyc06g075510.2
Solanum lycopersicum
Solyc06g075510.2
I
0.767
Eucgr.B02453
Eucalyptus grandis
Eucgr.B02453
I
0.767
GSMUA_Achr8G21030_001
Musa acuminata
GSMUA_Achr8G21030_001
I
0.765
mgf005133m
Mimulus guttatus
mgf005133m
I
0.765
mgf010466m
Mimulus guttatus
mgf010466m
I
0.765
Ciclev10025364m.g
Citrus clementina
Ciclev10025364m.g
I
0.764
orange1.1g009943m.g
Citrus sinensis
orange1.1g009943m.g
I
0.764
Pavir.J27340
Panicum virgatum
Pavir.J27340
I
0.764
Lus10004990.g
Linum usitatissimum
Lus10004990.g
I
0.763
Lus10015055.g
Linum usitatissimum
Lus10015055.g
I
0.762
cassava13884.valid.m1
Manihot esculenta
cassava13884.valid.m1
I
0.760
Ciclev10031306m.g
Citrus clementina
Ciclev10031306m.g
I
0.757
orange1.1g010763m.g
Citrus sinensis
orange1.1g010763m.g
I
0.757
Pavir.J37968
Panicum virgatum
Pavir.J37968
I
0.757
GRMZM2G160730
Zea mays
GRMZM2G160730
I
0.755
P93632_MAIZE
Zea mays
P93632_MAIZE
D
0.755
Sb10g025053
Sorghum bicolor
Sb10g025053
I
0.755
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.750
BRADI1G30337
Brachypodium distachyon
BRADI1G30337
I
0.748
Pavir.Da00466
Panicum virgatum
Pavir.Da00466
I
0.748
MLOC_43041
Hordeum vulgare
MLOC_43041
I
0.747
gene18102-v1.0-hybrid
Fragaria vesca
gene18102-v1.0-hybrid
I
0.745
Lus10036141.g
Linum usitatissimum
Lus10036141.g
I
0.744
evm.TU.supercontig_139.43
Carica papaya
evm.TU.supercontig_139.43
I
0.742
Cla020549
Citrullus lanatus
Cla020549
I
0.737
OS03G0818800
Oryza sativa
OS03G0818800
I
0.733
Cucsa.065640
Cucumis sativus
Cucsa.065640
I
0.729
Cla018549
Citrullus lanatus
Cla018549
I
0.725
POPTR_0010s22320
Populus trichocarpa
POPTR_0010s22320
I
0.684