gene25394-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene25394-v1.0-hybrid T008432_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.801 0.881
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.787 0.871
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.786 0.891
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.755 0.782
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna25394.1-v1.0-hybrid AP2 164 213
mrna25394.1-v1.0-hybrid AP2 256 334

Links

Other AP2 family TFs
Other Fragaria vesca TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.811
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.811
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.811
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.809
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.808
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.808
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.808
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.808
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.808
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.808
OS05G0121600 Oryza sativa OS05G0121600 I 0.808
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.808
Si025305m.g Setaria italica Si025305m.g I 0.808
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.808
Ca_02499 Cicer arietinum Ca_02499 I 0.808
28752.m000339 Ricinus communis 28752.m000339 I 0.808
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.808
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.808
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.808
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.808
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.808
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.808
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.808
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.808
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.808
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.807
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.807
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.807
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.807
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.807
TCM_022077 Theobroma cacao TCM_022077 I 0.807
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.807
Pm002492 Prunus mume Pm002492 I 0.807
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.807
MDP0000200319 Malus domestica MDP0000200319 I 0.807
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.807
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.806
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.806
PK07183.1 Cannabis sativa PK07183.1 I 0.806
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.805
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.805
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.805
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.804
Pm000974 Prunus mume Pm000974 I 0.804
MDP0000181606 Malus domestica MDP0000181606 I 0.804
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.803
F775_32962 Aegilops tauschii F775_32962 I 0.803
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.803
TCM_042000 Theobroma cacao TCM_042000 I 0.803
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.803
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.803
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.803
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.803
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.803
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.803
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.802
29805.m001494 Ricinus communis 29805.m001494 I 0.802
AP2 Arabidopsis thaliana AT4G36920 I 0.801
Bo1g004960 Brassica oleracea Bo1g004960 I 0.801
Bo7g118400 Brassica oleracea Bo7g118400 I 0.801
Bra011741 Brassica rapa Bra011741 I 0.801
Bra017809 Brassica rapa Bra017809 I 0.801
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.801
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.801
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.801
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.801
Ca_09295 Cicer arietinum Ca_09295 I 0.801
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.801
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.801
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.801
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.801
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.800
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.800
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.800
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.800
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.800
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.800
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.800
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.800
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.800
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.800
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.800
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.800
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.800
Cla000716 Citrullus lanatus Cla000716 I 0.800
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.800
mgf021945m Mimulus guttatus mgf021945m I 0.800
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.800
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.800
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.800
PK02403.1 Cannabis sativa PK02403.1 I 0.800
TOE3 Arabidopsis thaliana AT5G67180 I 0.799
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.799
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.799
Cla018124 Citrullus lanatus Cla018124 I 0.799
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.799
mgf009315m Mimulus guttatus mgf009315m I 0.799
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.799
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.799
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.799
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.799
TCM_000665 Theobroma cacao TCM_000665 I 0.797
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.797
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.797
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.796
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.794
Bo7g064000 Brassica oleracea Bo7g064000 I 0.793
Bra012139 Brassica rapa Bra012139 I 0.793
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.792
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.792
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.792
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.792
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.792
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.792
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.792
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.792
Si012635m.g Setaria italica Si012635m.g I 0.792
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.792
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.792
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.791
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.790
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.790
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.789
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.789
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.789
Ca_12010 Cicer arietinum Ca_12010 I 0.789
29169.m000017 Ricinus communis 29169.m000017 I 0.789
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.789
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.788
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.787
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.787
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.786
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.786
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.786
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.786
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.786
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.786
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.786
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.786
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.786
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.785
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.785
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.784
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.784
MDP0000137561 Malus domestica MDP0000137561 I 0.784
Bo4g070350 Brassica oleracea Bo4g070350 I 0.783
Bra011939 Brassica rapa Bra011939 I 0.783
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.783
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.783
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.783
Ca_14618 Cicer arietinum Ca_14618 I 0.783
Pm030172 Prunus mume Pm030172 I 0.783
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.783
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.783
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.783
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.782
OBART07G08110 Oryza barthii OBART07G08110 I 0.782
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.782
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.782
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.782
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.782
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.782
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.782
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.782
OS07G0235800 Oryza sativa OS07G0235800 I 0.782
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.782
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.781
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.780
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.780
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.780
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.780
Si036068m.g Setaria italica Si036068m.g I 0.780
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.780
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.780
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.780
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.780
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.780
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.779
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.779
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.779
Si029636m.g Setaria italica Si029636m.g I 0.779
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.779
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.779
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.779
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.778
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.778
OB06G29960 Oryza brachyantha OB06G29960 I 0.778
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.778
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.778
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.778
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.778
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.778
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.778
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.778
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.778
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.778
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.777
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.776
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.776
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.775
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.775
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.775
MDP0000163645 Malus domestica MDP0000163645 I 0.773
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.771
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.770
OB03G45870 Oryza brachyantha OB03G45870 I 0.770
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.769
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.767
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.767
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.765
mgf005133m Mimulus guttatus mgf005133m I 0.765
mgf010466m Mimulus guttatus mgf010466m I 0.765
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.764
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.764
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.764
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.763
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.762
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.760
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.757
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.757
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.757
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.755
P93632_MAIZE Zea mays P93632_MAIZE D 0.755
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.755
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.750
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.748
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.748
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.747
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.745
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.744
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.742
Cla020549 Citrullus lanatus Cla020549 I 0.737
OS03G0818800 Oryza sativa OS03G0818800 I 0.733
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.729
Cla018549 Citrullus lanatus Cla018549 I 0.725
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.684