Lus10041595.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10041595.g T008934_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.821 0.949
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.791 0.878
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.789 0.898
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.775 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041595 AP2 159 210
Lus10041595 AP2 253 304

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.835
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.835
29169.m000017 Ricinus communis 29169.m000017 I 0.834
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.834
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.831
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.826
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.825
AP2 Arabidopsis thaliana AT4G36920 I 0.821
Bo1g004960 Brassica oleracea Bo1g004960 I 0.821
Bo7g118400 Brassica oleracea Bo7g118400 I 0.821
Bra011741 Brassica rapa Bra011741 I 0.821
Bra017809 Brassica rapa Bra017809 I 0.821
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.821
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.821
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.821
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.821
Ca_09295 Cicer arietinum Ca_09295 I 0.821
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.821
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.821
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.821
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.821
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.820
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.820
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.820
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.820
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.820
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.820
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.820
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.820
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.820
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.820
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.820
Cla000716 Citrullus lanatus Cla000716 I 0.820
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.820
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.820
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.820
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.820
PK02403.1 Cannabis sativa PK02403.1 I 0.820
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.819
mgf009315m Mimulus guttatus mgf009315m I 0.819
29805.m001494 Ricinus communis 29805.m001494 I 0.818
TCM_000665 Theobroma cacao TCM_000665 I 0.816
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.816
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.816
TOE3 Arabidopsis thaliana AT5G67180 I 0.815
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.815
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.815
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.815
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.815
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.815
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.814
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.812
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.812
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.812
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.812
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.812
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.812
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.812
OS05G0121600 Oryza sativa OS05G0121600 I 0.812
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.812
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.812
Si025305m.g Setaria italica Si025305m.g I 0.812
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.812
Ca_02499 Cicer arietinum Ca_02499 I 0.812
28752.m000339 Ricinus communis 28752.m000339 I 0.812
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.812
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.812
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.812
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.812
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.812
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.812
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.812
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.812
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.812
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.812
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.811
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.811
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.811
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.811
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.811
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.811
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.811
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.811
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.811
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.811
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.811
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.811
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.811
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.811
Si012635m.g Setaria italica Si012635m.g I 0.811
TCM_022077 Theobroma cacao TCM_022077 I 0.811
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.811
Pm002492 Prunus mume Pm002492 I 0.811
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.811
MDP0000200319 Malus domestica MDP0000200319 I 0.811
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.811
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.810
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.810
F775_32962 Aegilops tauschii F775_32962 I 0.810
TCM_042000 Theobroma cacao TCM_042000 I 0.810
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.810
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.810
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.810
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.810
Bo7g064000 Brassica oleracea Bo7g064000 I 0.809
Bra012139 Brassica rapa Bra012139 I 0.809
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.809
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.809
mgf021945m Mimulus guttatus mgf021945m I 0.809
PK07183.1 Cannabis sativa PK07183.1 I 0.809
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.808
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.808
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.807
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.807
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.807
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.807
Pm000974 Prunus mume Pm000974 I 0.807
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.807
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.807
MDP0000181606 Malus domestica MDP0000181606 I 0.807
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.807
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.806
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.806
Cla018124 Citrullus lanatus Cla018124 I 0.805
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.805
MDP0000137561 Malus domestica MDP0000137561 I 0.804
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.804
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.803
Pm030172 Prunus mume Pm030172 I 0.803
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.803
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.803
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.803
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.802
Ca_14618 Cicer arietinum Ca_14618 I 0.800
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.799
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.799
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.798
OB06G29960 Oryza brachyantha OB06G29960 I 0.798
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.798
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.798
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.798
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.798
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.796
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.795
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.795
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.794
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.794
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.794
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.794
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.794
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.794
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.794
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.793
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.792
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.792
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.792
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.792
Ca_12010 Cicer arietinum Ca_12010 I 0.792
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.792
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.791
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.791
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.790
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.789
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.789
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.789
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.789
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.789
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.789
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.789
Bo4g070350 Brassica oleracea Bo4g070350 I 0.788
Bra011939 Brassica rapa Bra011939 I 0.788
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.787
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.787
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.787
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.786
OB03G45870 Oryza brachyantha OB03G45870 I 0.786
OBART07G08110 Oryza barthii OBART07G08110 I 0.786
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.786
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.786
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.786
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.786
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.786
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.786
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.786
OS07G0235800 Oryza sativa OS07G0235800 I 0.786
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.786
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.786
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.786
mgf005133m Mimulus guttatus mgf005133m I 0.785
mgf010466m Mimulus guttatus mgf010466m I 0.785
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.784
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.784
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.784
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.784
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.784
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.784
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.784
Si029636m.g Setaria italica Si029636m.g I 0.784
Si036068m.g Setaria italica Si036068m.g I 0.784
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.784
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.784
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.784
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.784
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.783
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.783
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.782
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.781
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.780
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.780
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.778
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.778
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.775
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.775
P93632_MAIZE Zea mays P93632_MAIZE D 0.775
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.775
MDP0000163645 Malus domestica MDP0000163645 I 0.774
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.772
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.772
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.768
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.768
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.767
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.766
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.764
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.764
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.764
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.763
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.763
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.758
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.757
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.755
Cla018549 Citrullus lanatus Cla018549 I 0.753
OS03G0818800 Oryza sativa OS03G0818800 I 0.751
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.747
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.747
Cla020549 Citrullus lanatus Cla020549 I 0.742